View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12029_low_3 (Length: 814)

Name: NF12029_low_3
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12029_low_3
NF12029_low_3
[»] chr1 (3 HSPs)
chr1 (23-437)||(52708283-52708687)
chr1 (598-668)||(3324902-3324972)
chr1 (598-671)||(48315108-48315181)
[»] chr3 (4 HSPs)
chr3 (463-784)||(50301706-50302045)
chr3 (598-671)||(10773485-10773558)
chr3 (598-671)||(32862071-32862144)
chr3 (598-671)||(4317467-4317540)
[»] chr4 (7 HSPs)
chr4 (598-671)||(39264737-39264810)
chr4 (598-671)||(2737723-2737796)
chr4 (598-671)||(48997058-48997131)
chr4 (598-670)||(38372657-38372729)
chr4 (598-671)||(16041378-16041451)
chr4 (562-671)||(45065544-45065654)
chr4 (598-671)||(12391334-12391407)
[»] chr2 (6 HSPs)
chr2 (711-810)||(23757861-23757957)
chr2 (747-810)||(33522523-33522586)
chr2 (598-671)||(23757712-23757785)
chr2 (587-645)||(12197420-12197478)
chr2 (623-668)||(33522370-33522415)
chr2 (675-709)||(23757801-23757835)
[»] chr8 (4 HSPs)
chr8 (747-810)||(42476355-42476418)
chr8 (598-668)||(28733228-28733298)
chr8 (623-666)||(42476528-42476571)
chr8 (598-670)||(10227238-10227309)
[»] chr6 (1 HSPs)
chr6 (554-678)||(23112034-23112164)
[»] chr5 (2 HSPs)
chr5 (589-671)||(37344574-37344656)
chr5 (710-776)||(37344692-37344757)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 437
Target Start/End: Original strand, 52708283 - 52708687
Alignment:
Q  23 agctgataaggtaccaggaacttcaattgtccattttcaatttcaatttctttaatggattggatccgtttatttatt-attactatcgcatctcatcgc 121  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||||||||||||||| |||| ||      || |||||    
T  52708283 agctgataaggtaccaggaacttcaatt--------tcaatttcaatttctttaatgtattggatccgtttatttatttattatta------ct-atcgc 52708367  T
Q  122 atcgcagttagatgaagatttgcaaagagccagatgcatcattgttgatggcgatgcttcttacctccttcctggacatgctcaaggtttctttctttct 221  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52708368 atcgcagttagatgaagatttgcaaagagccagatgcatcatcgttgatggcgatgcttcttacctccttcctggacatgctcaaggtttctttctttct 52708467  T
Q  222 t----aattaattacttccactaatnnnnnnnnnnnnnnnnnnnntaatttctttcatttaggtaagtttctcaggatgtttttgggtccaattaatgtt 317  Q
    |    |||||||||||||||| |||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52708468 ttcttaattaattacttccaccaattcattcatcatcatcatcattaatttctttcatttaggtaagtttctcaggatgtttttgggtccaattaatgtt 52708567  T
Q  318 cgtgcctctcgcaaggatgttcagcttaaggttaaagaggaatacaatagttacagggtaatttctactacttgcattcaaattaccccaacttcttcac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52708568 cgtgcctctcgcaaggatgttcagcttaaggttaaagaggaatacaacagttacagggtaatttctactacttgcattcaaattacctcaacttcttcac 52708667  T
Q  418 ttgcaatccgttgcatgtaa 437  Q
    || |||||||||||||||||    
T  52708668 ttccaatccgttgcatgtaa 52708687  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 598 - 668
Target Start/End: Complemental strand, 3324972 - 3324902
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaacc 668  Q
    ||||||||| |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||    
T  3324972 aaaattaactgaaccattacattggttattaaaccgaaccgttattttaaaaacaattcattaactgaacc 3324902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 598 - 671
Target Start/End: Complemental strand, 48315181 - 48315108
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    ||||||||| |||||||||||||||||||| |   |||| ||||||||||||||| ||||||||||||||||||    
T  48315181 aaaattaactgaaccattacattgattattaaatcgaacagttattttaaaaacagttcattaactgaaccgaa 48315108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 3e-84; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 463 - 784
Target Start/End: Original strand, 50301706 - 50302045
Alignment:
Q  463 cttaactattgttggtattattttactctcatgatcaattttcgatc-gtttg---------agttcatctttgttatattccacaacttagtcacttcc 552  Q
    ||||||||||||| |||| ||||||||||||| |||||||||| ||| |||||         ||||||||||||||||| ||||||||||||||||||||    
T  50301706 cttaactattgtttgtatcattttactctcataatcaattttcaatccgtttgtgtatgttaagttcatctttgttatactccacaacttagtcacttcc 50301805  T
Q  553 gtttagaggtgggcaaaaatattcaaaaactaaac-----aaatcgaaccaaaattaaccgaaccattacattgattattgatctgaaccgttattttaa 647  Q
    |||||||||||||||||||||| | |||| || ||     ||||| ||| ||||||||| |||||||||||||| ||||||||| ||||| |||||||||    
T  50301806 gtttagaggtgggcaaaaatatcctaaaagtagacgaacaaaatcaaactaaaattaactgaaccattacattggttattgatccgaaccattattttaa 50301905  T
Q  648 aaacaattcattaactgaaccgaatcgaaccaaacttaattaactaaactgaaccattacattttctcacacaaaaattcattttcacac---nnnnnnn 744  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||              
T  50301906 aaacagttcattaactgaaccaaaccgaaccaaacttaattaactaaaccgaaccattacattttctcacacaaaaattcattttcacacaaaaaaaaaa 50302005  T
Q  745 nncccttttctaaaccctaatttcatttcaatttcgatcc 784  Q
      ||||||||||||||||||||||||||||||||| ||||    
T  50302006 aacccttttctaaaccctaatttcatttcaatttctatcc 50302045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 598 - 671
Target Start/End: Original strand, 10773485 - 10773558
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    ||||||||| ||||||||  |||||||||||| | |||||||||||||||||||  |  |||||||||||||||    
T  10773485 aaaattaactgaaccattttattgattattgaaccgaaccgttattttaaaaacggtcaattaactgaaccgaa 10773558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 598 - 671
Target Start/End: Original strand, 32862071 - 32862144
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    ||||||||| ||| |||| ||||  ||||||| |  |||||||||||||||||||||||| |||||||||||||    
T  32862071 aaaattaactgaatcattgcattatttattgaaccaaaccgttattttaaaaacaattcactaactgaaccgaa 32862144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 671
Target Start/End: Complemental strand, 4317540 - 4317467
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    ||||||||||||||| ||| | ||  |||||| |||||||| |||||| || ||| ||||||||||||| ||||    
T  4317540 aaaattaaccgaacctttatagtggatattgaactgaaccgctattttgaagacagttcattaactgaatcgaa 4317467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 598 - 671
Target Start/End: Original strand, 39264737 - 39264810
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  39264737 aaaattaaccgaaccattacattggttattgaactgaaccattattttaaaaacagttcattaactgaaccgaa 39264810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 598 - 671
Target Start/End: Complemental strand, 2737796 - 2737723
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    ||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||    
T  2737796 aaaattaactgaaccattacattggttattgaaccgaaccgttattttaaaaacaaatcattaactgaaccgaa 2737723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 598 - 671
Target Start/End: Complemental strand, 48997131 - 48997058
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    |||||||||||||||| ||||||| ||||| | |  ||||||||||||||||||| ||||||||||||| ||||    
T  48997131 aaaattaaccgaaccactacattggttattaaaccaaaccgttattttaaaaacagttcattaactgaatcgaa 48997058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 598 - 670
Target Start/End: Complemental strand, 38372729 - 38372657
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccga 670  Q
    ||||||||| |||| ||| ||||| ||||||| | |||| ||||||||||||||| |||||||||||||||||    
T  38372729 aaaattaactgaactattgcattggttattgaaccgaacagttattttaaaaacagttcattaactgaaccga 38372657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 598 - 671
Target Start/End: Original strand, 16041378 - 16041451
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    ||||||||||||||| ||| ||||  |||||| |||||||| |||||| || ||| ||||||||||||||||||    
T  16041378 aaaattaaccgaacctttatattggatattgaactgaaccgctattttgaagacagttcattaactgaaccgaa 16041451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 562 - 671
Target Start/End: Original strand, 45065544 - 45065654
Alignment:
Q  562 tgggcaaaaatattcaaaaactaaaca-aatcgaaccaaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcatta 660  Q
    ||||||||||||| |||||||  |||  || | ||| ||||||| | ||| |||||||||| |||||||   ||  |||||||||||||||| |||||||    
T  45065544 tgggcaaaaatatccaaaaaccgaaccgaaccaaactaaaattagctgaatcattacattggttattgaatcgagtcgttattttaaaaacagttcatta 45065643  T
Q  661 actgaaccgaa 671  Q
    |||||| ||||    
T  45065644 actgaatcgaa 45065654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 671
Target Start/End: Complemental strand, 12391407 - 12391334
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    ||||||||||||||| ||| ||||  |||||| |||||||| |||||| | | || ||||||||| ||||||||    
T  12391407 aaaattaaccgaacctttatattggatattgaactgaaccgctattttgagaccagttcattaaccgaaccgaa 12391334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 711 - 810
Target Start/End: Original strand, 23757861 - 23757957
Alignment:
Q  711 ttctcacacaaaaattcattttcacacnnnnnnnnncccttttctaaaccctaatttcatttcaatttcgatccaatccaactcttcttctctgcttctc 810  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| |||||    
T  23757861 ttctcacacaaaaattcattttcacacaaaaaa---cccttttctaaaccctaatttcatttcaatttcaatctaatccacctcttcttctctgattctc 23757957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 747 - 810
Target Start/End: Original strand, 33522523 - 33522586
Alignment:
Q  747 cccttttctaaaccctaatttcatttcaatttcgatccaatccaactcttcttctctgcttctc 810  Q
    ||||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||| |||||    
T  33522523 cccttttctaaaccctactttcatttcaatttcaatccaattcacctcttcttctctgattctc 33522586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 598 - 671
Target Start/End: Original strand, 23757712 - 23757785
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    ||||||||  |||||||||||||| ||||||| | || |||||||||||| ||||||| |||||||||||||||    
T  23757712 aaaattaattgaaccattacattggttattgaaccgatccgttattttaagaacaatttattaactgaaccgaa 23757785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 587 - 645
Target Start/End: Original strand, 12197420 - 12197478
Alignment:
Q  587 caaatcgaaccaaaattaaccgaaccattacattgattattgatctgaaccgttatttt 645  Q
    |||| ||||||||||||||||||||||||||| || ||||||| | |||||||||||||    
T  12197420 caaaccgaaccaaaattaaccgaaccattacactggttattgaaccgaaccgttatttt 12197478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 668
Target Start/End: Original strand, 33522370 - 33522415
Alignment:
Q  623 ttattgatctgaaccgttattttaaaaacaattcattaactgaacc 668  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  33522370 ttattgaactgaaccgttattttaaaaacaattcactaactaaacc 33522415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 709
Target Start/End: Original strand, 23757801 - 23757835
Alignment:
Q  675 aaccaaacttaattaactaaactgaaccattacat 709  Q
    |||||||||||||||||||||| ||||||||||||    
T  23757801 aaccaaacttaattaactaaaccgaaccattacat 23757835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 747 - 810
Target Start/End: Complemental strand, 42476418 - 42476355
Alignment:
Q  747 cccttttctaaaccctaatttcatttcaatttcgatccaatccaactcttcttctctgcttctc 810  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| |||||    
T  42476418 cccttttctaaaccctaatttcatttcaatttcaatccaattcacctcttcttctctgattctc 42476355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 598 - 668
Target Start/End: Original strand, 28733228 - 28733298
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaacc 668  Q
    ||||||||| ||| |||||||||| ||||| | | |||||||||||||||||||| |||||||||||||||    
T  28733228 aaaattaactgaatcattacattggttattaaacagaaccgttattttaaaaacagttcattaactgaacc 28733298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 623 - 666
Target Start/End: Complemental strand, 42476571 - 42476528
Alignment:
Q  623 ttattgatctgaaccgttattttaaaaacaattcattaactgaa 666  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
T  42476571 ttattgaactgaaccgttattttaaaaacaattcactaactgaa 42476528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 598 - 670
Target Start/End: Complemental strand, 10227309 - 10227238
Alignment:
Q  598 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccga 670  Q
    ||||||||| |||||||||||||| ||||||| | |||||||| ||||||||| | ||||| ||||| |||||    
T  10227309 aaaattaactgaaccattacattggttattgaaccgaaccgtt-ttttaaaaaaagttcatcaactgtaccga 10227238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 554 - 678
Target Start/End: Complemental strand, 23112164 - 23112034
Alignment:
Q  554 tttagaggtgggcaaaaatattcaaaaactaaaca-aatcgaaccaaa-----attaaccgaaccattacattgattattgatctgaaccgttattttaa 647  Q
    ||||||||||||||||||||| |||||||| |||  || |||||||||     |||||   |||||||||| || ||||||| | |||||||||||||||    
T  23112164 tttagaggtgggcaaaaatatccaaaaactgaaccgaaccgaaccaaacgaaaattaattaaaccattacagtggttattgaaccgaaccgttattttaa 23112065  T
Q  648 aaacaattcattaactgaaccgaatcgaacc 678  Q
    ||||| |||||||| ||||||||| ||||||    
T  23112064 aaacagttcattaattgaaccgaaccgaacc 23112034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 589 - 671
Target Start/End: Original strand, 37344574 - 37344656
Alignment:
Q  589 aatcgaaccaaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 671  Q
    |||| ||| ||||||||| ||| |||||||||| ||||||| | |||||||||||||||||||| ||||||||| ||||||||    
T  37344574 aatcaaactaaaattaactgaatcattacattggttattgaaccgaaccgttattttaaaaacagttcattaaccgaaccgaa 37344656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 776
Target Start/End: Original strand, 37344692 - 37344757
Alignment:
Q  710 tttctcacacaaaaattcattttcacacnnnnnnnnncccttttctaaaccctaatttcatttcaat 776  Q
    ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  37344692 tttctcacacaaaaattcattttcacacaaaaagaa-cccttttctaaaccctaatttcatttcaat 37344757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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