View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12029_low_30 (Length: 320)

Name: NF12029_low_30
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12029_low_30
NF12029_low_30
[»] scaffold1301 (2 HSPs)
scaffold1301 (1-180)||(1949-2128)
scaffold1301 (199-304)||(1-113)
[»] chr8 (1 HSPs)
chr8 (182-304)||(18387636-18387759)
[»] chr1 (4 HSPs)
chr1 (163-301)||(17311429-17311568)
chr1 (1-33)||(23983788-23983820)
chr1 (1-33)||(38861030-38861062)
chr1 (1-33)||(52632110-52632142)
[»] chr3 (5 HSPs)
chr3 (163-304)||(5965500-5965642)
chr3 (213-298)||(11497914-11498000)
chr3 (202-303)||(5051570-5051669)
chr3 (202-260)||(7492600-7492658)
chr3 (1-33)||(49165860-49165892)
[»] scaffold0603 (1 HSPs)
scaffold0603 (202-297)||(5134-5230)
[»] chr5 (1 HSPs)
chr5 (202-298)||(16446478-16446575)
[»] chr7 (2 HSPs)
chr7 (1-33)||(14816424-14816456)
chr7 (1-33)||(15263420-15263452)
[»] chr4 (3 HSPs)
chr4 (1-33)||(168289-168321)
chr4 (1-33)||(4189622-4189654)
chr4 (1-33)||(35319646-35319678)


Alignment Details
Target: scaffold1301 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 1949 - 2128
Alignment:
Q  1 aaaatgcgttttaccacgttttttgactgcattacggcattcaagttatcaccattaactgtttgtgaatgaacaggttcgaggatattttccaaaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1949 aaaatgcgttttaccacgttttttgactgcattacggcattcaagttatcaccattaactgtttgtgaatgaacaggttcgaggatattttccaaaacac 2048  T
Q  101 ataaagtgtaataatgttttgactccctgaaaccataaaaatcatgttttggcataaccctgaatttctccttaacttgg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2049 ataaagtgtaataatgttttgactccctgaaaccataaaaatcatgttttggcataaccctgaatttctccttaacttgg 2128  T

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Target: scaffold1301; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 1 - 113
Alignment:
Q  199 cttgcaagggctgatttaccaatccctgccataccgacaatgaaaataactcttattttacta------tcatcaccatcactagacaataaaa-atgtt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||    
T  1 cttgcaagggctgatttaccaatccctgccataccgacaatgaaaataactcttattttactatcatattcatcaccgtcattagacaataaaagatgtt 100  T
Q  292 taagtttgtttat 304  Q
    |||||||||||||    
T  101 taagtttgtttat 113  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 18387759 - 18387636
Alignment:
Q  182 gatcattgcaaaggactcttgcaagggctgatttaccaatccctgccataccgacaatgaaaataactcttattttactatcatcaccatcactagacaa 281  Q
    |||||||| ||||||   |||||||||||| ||||||||||||||||||||| |||||| |||||  |||| |||||||||||||||  ||| || ||||    
T  18387759 gatcattgtaaaggaaatttgcaagggctgttttaccaatccctgccatacccacaatggaaatagttcttgttttactatcatcactgtcattatacaa 18387660  T
Q  282 taaaa-atgtttaagtttgtttat 304  Q
    ||||| ||||||||||||||||||    
T  18387659 taaaagatgtttaagtttgtttat 18387636  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 301
Target Start/End: Complemental strand, 17311568 - 17311429
Alignment:
Q  163 aatttctccttaacttggagatcattgcaaaggactcttgcaagggctgatttaccaatccctgccataccgacaatgaaaataactcttattttactat 262  Q
    ||||||||| |||||| | |||||||| |||| | | | |||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||| |||||    
T  17311568 aatttctccataacttcgcgatcattgtaaagtagtttggcaagggctgttttaccaatccctcccatacccacaatggaaataactcttatttgactat 17311469  T
Q  263 catcaccatcactagacaataaaa-atgtttaagtttgtt 301  Q
    |||||  ||||||| |||| |||| ||| |||||||||||    
T  17311468 catcaaaatcactaaacaacaaaagatggttaagtttgtt 17311429  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23983820 - 23983788
Alignment:
Q  1 aaaatgcgttttaccacgttttttgactgcatt 33  Q
    ||||||| |||||||||||||||||||||||||    
T  23983820 aaaatgctttttaccacgttttttgactgcatt 23983788  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38861030 - 38861062
Alignment:
Q  1 aaaatgcgttttaccacgttttttgactgcatt 33  Q
    |||| ||||||||||||||||||||||||||||    
T  38861030 aaaacgcgttttaccacgttttttgactgcatt 38861062  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 52632142 - 52632110
Alignment:
Q  1 aaaatgcgttttaccacgttttttgactgcatt 33  Q
    |||| ||||||||||||||||||||||||||||    
T  52632142 aaaacgcgttttaccacgttttttgactgcatt 52632110  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 304
Target Start/End: Complemental strand, 5965642 - 5965500
Alignment:
Q  163 aatttctccttaacttggagatcattgcaaaggactcttgcaagggctgatttaccaatccctgccataccgacaatgaaaataactcttattttactat 262  Q
    ||||| |||||||| | | |||||||| |||| ||  | ||||||| || ||||||||||||| | ||||| |||||| |||||| || |||||||| ||    
T  5965642 aatttatccttaacatcgggatcattgtaaagaaccttagcaagggttgttttaccaatcccttcaatacccacaatggaaataattcctattttaccat 5965543  T
Q  263 catcaccatcactagacaataaaa-atgtttaagtttgtttat 304  Q
    ||||||| ||||||||||| |||| |||||||||||| |||||    
T  5965542 catcaccgtcactagacaacaaaagatgtttaagtttctttat 5965500  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 11497914 - 11498000
Alignment:
Q  213 tttaccaatccctgccataccgacaatgaaaataactcttattttactatcatcaccatcactagacaataaaa-atgtttaagttt 298  Q
    ||||||||||||| | ||||| || ||  |||||| || ||||| ||||||||||| |||||||||||| |||| ||||||||||||    
T  11497914 tttaccaatcccttcaatacccacgattgaaataattcgtatttgactatcatcacaatcactagacaacaaaagatgtttaagttt 11498000  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 303
Target Start/End: Complemental strand, 5051669 - 5051570
Alignment:
Q  202 gcaagggctgatttaccaatccctgccataccgacaatgaaaataactcttattttactatcatcaccatcactagacaataaaa-atgtttaagtttgt 300  Q
    |||||||||| ||||||||||||| |||| || || ||| |||||| ||||||||    |||||| |||||| |||| ||||||| |||||||||||| |    
T  5051669 gcaagggctgttttaccaatccctaccattcccacgatggaaataattcttattt---gatcatctccatcattagaaaataaaagatgtttaagtttct 5051573  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 7492600 - 7492658
Alignment:
Q  202 gcaagggctgatttaccaatccctgccataccgacaatgaaaataactcttattttact 260  Q
    |||||||||| ||||||||||||| ||||||| |||||| | || | ||||||||||||    
T  7492600 gcaagggctgttttaccaatccctcccataccaacaatggagatcattcttattttact 7492658  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 49165892 - 49165860
Alignment:
Q  1 aaaatgcgttttaccacgttttttgactgcatt 33  Q
    |||| ||||||||||||||||||||||||||||    
T  49165892 aaaaagcgttttaccacgttttttgactgcatt 49165860  T

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Target: scaffold0603 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 5134 - 5230
Alignment:
Q  202 gcaagggctgatttaccaatccctgccataccgacaatgaaaataactcttattttactatcatcaccatcactagacaataaaa-atgtttaagtt 297  Q
    ||||||| || |||||| |||||||| ||||| |||||| |||| | || |||||||||||||||||||||   ||||||||||| |||||||||||    
T  5134 gcaagggttgttttaccgatccctgctataccaacaatggaaatgattcgtattttactatcatcaccatcttcagacaataaaagatgtttaagtt 5230  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 298
Target Start/End: Complemental strand, 16446575 - 16446478
Alignment:
Q  202 gcaagggctgatttaccaatccctgccataccgacaatgaaaataactcttattttactatcatcaccatcactagacaataaaa-atgtttaagttt 298  Q
    ||||||| || ||||||||||||| ||||||| |||||| |||||| || || |||||||| ||||  | || |||| ||||||| ||||||||||||    
T  16446575 gcaagggatgttttaccaatccctcccatacccacaatggaaataattcctactttactattatcaaaaccagtagataataaaagatgtttaagttt 16446478  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14816456 - 14816424
Alignment:
Q  1 aaaatgcgttttaccacgttttttgactgcatt 33  Q
    |||||| ||||||||||||||||||||||||||    
T  14816456 aaaatgtgttttaccacgttttttgactgcatt 14816424  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15263452 - 15263420
Alignment:
Q  1 aaaatgcgttttaccacgttttttgactgcatt 33  Q
    |||||| ||||||||||||||||||||||||||    
T  15263452 aaaatgtgttttaccacgttttttgactgcatt 15263420  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 168321 - 168289
Alignment:
Q  1 aaaatgcgttttaccacgttttttgactgcatt 33  Q
    |||| ||||||||||||||||||||||||||||    
T  168321 aaaacgcgttttaccacgttttttgactgcatt 168289  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4189654 - 4189622
Alignment:
Q  1 aaaatgcgttttaccacgttttttgactgcatt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  4189654 aaaatgcgttttaccacgttttttgattgcatt 4189622  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35319678 - 35319646
Alignment:
Q  1 aaaatgcgttttaccacgttttttgactgcatt 33  Q
    |||| ||||||||||||||||||||||||||||    
T  35319678 aaaacgcgttttaccacgttttttgactgcatt 35319646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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