View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_31 (Length: 317)
Name: NF12029_low_31
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 3656349 - 3656072
Alignment:
| Q |
1 |
agtggcggtacaatgaccatcaaggagaaatggtatatttctaccttaacagatgtggaagaagttaaaatggtaataaggatgttacccatatgggcca |
100 |
Q |
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| T |
3656349 |
agtggcggtacaataaccatcaaggagaaatggtatatttctaccttaacagatgtggaagaagttaaaatggtaataaggatgttacccatatgggcca |
3656250 |
T |
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| Q |
101 |
caaccataatgttttggacaatccatgctcaaatgacaacattctcagtatcacaagcaacaaccatggattgtcaaattggaacatttcaaatcccagc |
200 |
Q |
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| T |
3656249 |
caaccataatgttttggacaatccatgctcaaatgacaacattctcagtatcacaagcaacaaccatggattgtcaaattggaacatttcaaatcccagc |
3656150 |
T |
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| Q |
201 |
agcatcaatgaccgtcttcttaatcggaactattctcctaaccgttcctttctatgaccgcttcattcgaccagtcgc |
278 |
Q |
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| T |
3656149 |
agcatcaatgaccgtcttcttaatcggaactattctcctaaccgttcctttctacgaccgcttcattcgacccgtcgc |
3656072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 3645639 - 3645439
Alignment:
| Q |
40 |
tctaccttaacagatgtggaagaagttaaaatggtaataaggatgttacccatatgggccacaaccataatgttttggacaatccatgctcaaatgacaa |
139 |
Q |
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| T |
3645639 |
tctaccttaaccgatatagaagaagtgaaattggtgctaagaatgctccctatatgggcatcaaccatcgtgttttggactgttcaagttcaaatgatga |
3645540 |
T |
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| Q |
140 |
cattctcagtatcacaagcaacaaccatggattgtcaaattggaa---catttcaaatcccagcagcatcaatgaccgtcttcttaatcggaactattct |
236 |
Q |
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| T |
3645539 |
cactctcggtatcacaggcaaccactatggatcgccacattggaaaatcatttcaaatcccagcagcatcaatgacatcctttttaattggaactattct |
3645440 |
T |
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| Q |
237 |
c |
237 |
Q |
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| T |
3645439 |
c |
3645439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 41875363 - 41875500
Alignment:
| Q |
27 |
gaaatggtatatttctaccttaacagatgtggaagaagttaaaatggtaataaggatgttacccatatgggccacaaccataatgttttggacaatccat |
126 |
Q |
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|||||||||| | || |||||||||||||| |||||||| ||| |||| |||| |||||||| |||||||||||||| ||||||||||||||| | || |
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| T |
41875363 |
gaaatggtatctatcaaccttaacagatgttgaagaagtaaaattggttttaagaatgttaccaatatgggccacaacgataatgttttggacagtatat |
41875462 |
T |
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| Q |
127 |
gctcaaatgacaacattctcagtatcacaagcaacaac |
164 |
Q |
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| T |
41875463 |
gcacaaatgaccacattctcagtatcacaagcaacaac |
41875500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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