View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12029_low_32 (Length: 293)

Name: NF12029_low_32
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12029_low_32
NF12029_low_32
[»] chr1 (1 HSPs)
chr1 (10-293)||(48824027-48824313)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 293
Target Start/End: Original strand, 48824027 - 48824313
Alignment:
Q  10 acatcaattttataaggcattaattacttgttttatcaattatcacttcaaaatgaggatatcatacagtgccatgtagcataaggaaaataagatctct 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48824027 acatcaattttataaggtattaattacttgttttatcaattatcacttcaaaatgaggatatcatacagtgccatgtagcataaggaaaataagatctct 48824126  T
Q  110 tttctaatgctgcataattcatagtgaagttgtcttgattttgctagtttttgagcaagcaagaagttgtgaattttctcctcgaccttttgtggtttgc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48824127 tttctaatgctgcataattcatagtgaagttgtcttgattttgctagtttttgagcaagcaagaagttgtgaattttctcctcgaccttttgtggtttgc 48824226  T
Q  210 actgaatgaaaggaacaaacaaatatgtacttg---nnnnnnnnttcaatgcagactctgagtaagaatatatgatgcaaagagaac 293  Q
    |||||||||||||||||||||||||||||||||            |||||||||||||||||| |||||||||||||||||||||||    
T  48824227 actgaatgaaaggaacaaacaaatatgtacttgaaaaaaaaaaaatcaatgcagactctgagtgagaatatatgatgcaaagagaac 48824313  T

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