View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_33 (Length: 289)
Name: NF12029_low_33
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_33 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 6448119 - 6447944
Alignment:
| Q |
25 |
ttcaattccagcatatcaatctgctgagcaagagaatctaggctctttatcaattctttgatccttgattcaaatggattagtaagagttggaatgaagt |
124 |
Q |
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||||||||||||| ||| | |||| |||||| ||||||| |||||| ||| ||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
6448119 |
ttcaattccagcacatccttttgctctgcaagataatctagattctttagcaagtctttgatcctagattcaaatggattggcaagagttggaatgaagt |
6448020 |
T |
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| Q |
125 |
tgaaaatattgctagtagaaggttgagattcggccttcagcttcttcagtggtgcatcagttgcaatctcatctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6448019 |
tgaaaatattgctagtagaaggttgagattcggccttcagcttcttcactggtgcatcagttgcaatctcatctaa |
6447944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 5250911 - 5251092
Alignment:
| Q |
75 |
caattctttgatccttgattcaaatggattagtaagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcagt |
174 |
Q |
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||||||||| ||||| ||||||||||||||||| | || || || ||||| ||| | ||||||||||||||||||||||| || ||||||||||||||| |
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| T |
5250911 |
caattctttaatcctagattcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagtagaaggttgagattcagctttcagcttcttcagt |
5251010 |
T |
|
| Q |
175 |
ggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcacgt |
256 |
Q |
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|||||||||||||||||||||||||| |||||| || ||||||| | |||||| | |||| |||||||||||||||||| |
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| T |
5251011 |
ggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgt |
5251092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 5268798 - 5268979
Alignment:
| Q |
75 |
caattctttgatccttgattcaaatggattagtaagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcagt |
174 |
Q |
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||||||||||||||| || |||||||||||||| | || | |||||||| ||| | ||||||||||||||||||||||| ||| ||||||||| | |
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| T |
5268798 |
caattctttgatcctagactcaaatggattagtgaaagacgaaatgaagtcgaataccttgctagtagaaggttgagattcaagtttctgcttcttcaat |
5268897 |
T |
|
| Q |
175 |
ggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcacgt |
256 |
Q |
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|||| ||||||||||||||||||||| |||||| || ||||||| | |||||| | |||| |||||||||||||||||| |
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| T |
5268898 |
ggtgtatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgt |
5268979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 255
Target Start/End: Complemental strand, 4388224 - 4388050
Alignment:
| Q |
75 |
caattctttgatccttgattcaaatggattagtaagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcagt |
174 |
Q |
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||||||||||||||| ||||||||||||||| | | || || || ||||||||| | |||||||||||||||| | ||| || ||||||||| | |
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| T |
4388224 |
caattctttgatcctagattcaaatggattaatgaaagatgaaaagaagttgaataccttgctagtagaaggttcaaatt------tctgcttcttcaat |
4388131 |
T |
|
| Q |
175 |
ggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcacg |
255 |
Q |
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|||||||||||||||||||||||||| |||||| || ||||||| | |||||| | |||| ||||||||||||||||| |
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| T |
4388130 |
ggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcattatgtttaagatcatcaagccacttcttcacg |
4388050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 5299473 - 5299654
Alignment:
| Q |
75 |
caattctttgatccttgattcaaatggattagtaagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcagt |
174 |
Q |
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||||||||||||||| || ||||| |||| |||| | || || ||||| ||| | |||||||||||||||||||| || | ||||||||||| | |
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| T |
5299473 |
caattctttgatcctagactcaaagggatcagtacacgatgaaaagaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgttt |
5299572 |
T |
|
| Q |
175 |
ggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcacgt |
256 |
Q |
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|||| | |||||||||||||| || || || | || ||||||| | ||||||| | ||||||||||||||||||||||| |
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| T |
5299573 |
ggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgt |
5299654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 5281481 - 5281572
Alignment:
| Q |
160 |
ttcagcttcttcagtggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttctt |
251 |
Q |
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|||||||| |||||| |||| ||||| ||||||||||| || | ||| | |||||||| | ||||||||| | |||| ||||||||||||| |
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| T |
5281481 |
ttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttctt |
5281572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 6453967 - 6453921
Alignment:
| Q |
97 |
aatggattagtaagagttggaatgaagttgaaaatattgctagtaga |
143 |
Q |
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| T |
6453967 |
aatggattagtaaaaggtagaatgaagttgaaaatattgatagtaga |
6453921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 6762386 - 6762432
Alignment:
| Q |
97 |
aatggattagtaagagttggaatgaagttgaaaatattgctagtaga |
143 |
Q |
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| T |
6762386 |
aatggattagtaaaaggtagaatgaagttgaaaatattgatagtaga |
6762432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 6553620 - 6553543
Alignment:
| Q |
177 |
tgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcac |
254 |
Q |
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||||||||| | ||||||||||||||| ||| | |||||||| | | ||||||| | ||| |||||||||||||||| |
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| T |
6553620 |
tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcac |
6553543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 8455501 - 8455578
Alignment:
| Q |
177 |
tgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcac |
254 |
Q |
| |
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||||||||| | ||||||||||||||| ||| | || ||||| | | ||||||| | |||| |||||||||||||||| |
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| T |
8455501 |
tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcac |
8455578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 6659 - 6582
Alignment:
| Q |
177 |
tgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcac |
254 |
Q |
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||||||||| | ||||||||||||||| ||| | |||||||| | | ||||||| | ||| |||||||||||||||| |
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| T |
6659 |
tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcac |
6582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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