View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_37 (Length: 249)
Name: NF12029_low_37
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_37 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 68141 - 68385
Alignment:
| Q |
12 |
atgaagacggtgggtgggtgtggattgtaattaaagaaacagaaaatctaaaaccattggcgcccaaccattgtttcctttcctcctcttttctaaaaac |
111 |
Q |
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| T |
68141 |
atgaagacggtgggtgggcgtggattgtaattaaagtaacagaaaatctaaaaccattggcgcccaaccattttttcctttcctcctcttttccaaaaac |
68240 |
T |
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| Q |
112 |
caacaaaacctttttcattctcaaatctcaattctc-------acacatccatcttccccctaaataaaaatggcaaacgcatttacttcacaccctaga |
204 |
Q |
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| T |
68241 |
caacaaaacctttttcattctcaaatctcaattctcacacacaacacatccatcttccccctaaataaaaatggcaaacgcatttacttcacaccctaga |
68340 |
T |
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| Q |
205 |
aaccaaattcaatggccaccacaacaacaaggtttcaccaaaaac |
249 |
Q |
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| T |
68341 |
aaccaaattcaatggccaccacaacaacaaggtttcaccaaaaac |
68385 |
T |
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