View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_4 (Length: 696)
Name: NF12029_low_4
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 143 - 684
Target Start/End: Original strand, 14021108 - 14021649
Alignment:
| Q |
143 |
cactagaacatgtacattgtacaaagaaaactaaatcatgaccaaaagtctagataaaattaaactcaaattagttcatcaacaataataagatcatcta |
242 |
Q |
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| T |
14021108 |
cactagagcatgtacattgtacaaagaaaactaaatcatgaccaaaggtctagataaaattaaactcaaattagttcatcaacaataataagatcatcta |
14021207 |
T |
|
| Q |
243 |
atcaaattaaagtactagaatcttacctaaacgtttaaacactaagacaaattaagtagcataaatatttataatgttccattccacttgcacccttatc |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14021208 |
atcaaattaaagtactagaatcttacctaaacgtttaaacactaagacaaattaagtagcataaatatttataatgttccattccacttgcacccttatc |
14021307 |
T |
|
| Q |
343 |
ttatcttcaaatgacatggaatattcaataaaccctaggaaagaaaatattcaaattttgttatttgggtttttgttttcatatctagggcttcttacca |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14021308 |
ttatcttcaaatgacatggaatattcaataaaccctaggaaagaaaatattcaaattttgttatttgggtttttgttttcatatctagggcttcttacca |
14021407 |
T |
|
| Q |
443 |
agagtgtgtttgttgttatgcatccaaaccttaagaacatgacgcttaacaccactttcattacagaattcttgaaccaaaccttcatcatgtttctgaa |
542 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14021408 |
agagtgtgtttgttgttatgcatccaaaccttaagaacatgacgcttaacaccactttcattacagaattcttgaaccaaaccttcatcatgtttctgaa |
14021507 |
T |
|
| Q |
543 |
ttctccaacccaatttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgtcctatgcctcttcttacttgaaccacttcctccacc |
642 |
Q |
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| T |
14021508 |
ttctccaacccaatttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgtcctatgcctcttcttacttgaaccacttcctccacc |
14021607 |
T |
|
| Q |
643 |
acttggattcgaaacatcttcaagctcttccctcgtactctg |
684 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
14021608 |
acttggattcgaaacatcttcaagctcttccctcgtactctg |
14021649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 14020960 - 14021072
Alignment:
| Q |
18 |
aattcatcatcataaatctcatattcttaaatcttaacctcactccaaatccaaaaatgcattcacattcatcaccaccaccacaacacaaacaatactg |
117 |
Q |
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| T |
14020960 |
aattcatcatcataaatctcatattcttaaatcttaacctcactccaaatccaaaaatgcattcacattcatcaccatcaccacaacacaaacaatactg |
14021059 |
T |
|
| Q |
118 |
caaattaaagaaa |
130 |
Q |
| |
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||||||||||||| |
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| T |
14021060 |
caaattaaagaaa |
14021072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 482
Target Start/End: Complemental strand, 27508737 - 27508683
Alignment:
| Q |
428 |
tagggcttcttaccaagagtgtgtttgttgttatgcatccaaaccttaagaacat |
482 |
Q |
| |
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| T |
27508737 |
tagggtttcttaccaagagtgttcttgttattgtgcatccaaactttaagaacat |
27508683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 428 - 606
Target Start/End: Original strand, 46300649 - 46300827
Alignment:
| Q |
428 |
tagggcttcttaccaagagtgtgtttgttgttatgcatccaaaccttaagaacatgacgcttaacaccactttcattacagaattcttgaaccaaacctt |
527 |
Q |
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||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| | ||| | | | | ||| |||||||| || || ||||| |
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| T |
46300649 |
tagggtttcttaccaagagtgtgcttgttattgtgcatccaaaccttaagcacatgtctcttgataaaattctcagcacagaattgttcaattgcacctt |
46300748 |
T |
|
| Q |
528 |
catcatgtttctgaattctccaacccaatttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgt |
606 |
Q |
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| T |
46300749 |
catcttccttctgaattctccacccaattttctccgcaaatgcaagcatcttatccttttgttcctgcgtgaattttgt |
46300827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 452 - 609
Target Start/End: Original strand, 2494258 - 2494415
Alignment:
| Q |
452 |
ttgttgttatgcatccaaaccttaagaacatgacgcttaacaccactttcattacagaattcttgaaccaaaccttcatcatgtttctgaattctccaac |
551 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| | ||||||| |||||||||| || || ||||| || | ||||| | |||||| || |||| | |
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| T |
2494258 |
ttgttgttatgcatccaaaccttaagaacactacgatcaacaccaatttcattacaaaactcatgaacaaattcatcatcttttttctgcatcttccacc |
2494357 |
T |
|
| Q |
552 |
ccaatttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgtcct |
609 |
Q |
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| | ||||||||| || | || ||||||||||||||| || || || || |||||||| |
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| T |
2494358 |
caactttctcagcaaatttcagcatcttatccttctgatcttgtgtaaactttgtcct |
2494415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 609
Target Start/End: Complemental strand, 56378802 - 56378749
Alignment:
| Q |
556 |
tttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgtcct |
609 |
Q |
| |
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||||||||| || | |||||| || |||||||||||||| |||||||||||||| |
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| T |
56378802 |
tttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcct |
56378749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 574 - 606
Target Start/End: Original strand, 3683646 - 3683678
Alignment:
| Q |
574 |
catcttatccttctgttcctgcgtgaattttgt |
606 |
Q |
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| T |
3683646 |
catcttttccttctgttcctgcgtgaattttgt |
3683678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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