View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12029_low_41 (Length: 240)

Name: NF12029_low_41
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12029_low_41
NF12029_low_41
[»] chr1 (14 HSPs)
chr1 (50-224)||(15000425-15000600)
chr1 (5-136)||(15000314-15000445)
chr1 (1-104)||(15015287-15015390)
chr1 (20-111)||(15009030-15009121)
chr1 (148-223)||(15009136-15009211)
chr1 (20-111)||(15023147-15023238)
chr1 (148-223)||(15023253-15023328)
chr1 (3-96)||(14501601-14501694)
chr1 (3-96)||(14535074-14535167)
chr1 (148-208)||(15030248-15030308)
chr1 (169-224)||(14501727-14501782)
chr1 (171-219)||(14534991-14535039)
chr1 (23-95)||(15030170-15030239)
chr1 (177-219)||(15015581-15015623)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 15000425 - 15000600
Alignment:
Q  50 caaaaccaccataataagtccaagtcttcaacttaaagacaaaagtggaagacttcaatgagaatacaaaaccaccataataagtctgagtcctcact-t 148  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |    
T  15000425 caaaaccaccataataagtctaagttttcaactttaagacaaaagtggaagactttaatgagaatacaaaaccaccataataagtctgagccctcactat 15000524  T
Q  149 tacaaatgggaatatcaattacaatgcattataaatatcacctacatctcccattataatgcattcatcatgatat 224  Q
     ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15000525 gacaaatgggaacatcaattacaaagcattataaatatcacctacatctcccattataatgcattcatcataatat 15000600  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 15000314 - 15000445
Alignment:
Q  5 taaactcgttacctccccctattactccgacctcatgtttatgatcaaaaccaccataataagtccaagtcttcaacttaaagacaaaagtggaagactt 104  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15000314 taaaatcgttacctccccctattactccaacctcatgtttctgatcaaaaccaccataataagtccaagtcttcaacttgaagacaaaagtggaagactt 15000413  T
Q  105 caatgagaatacaaaaccaccataataagtct 136  Q
    ||||||||||||||||||||||||||||||||    
T  15000414 caatgagaatacaaaaccaccataataagtct 15000445  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 15015287 - 15015390
Alignment:
Q  1 cagttaaactcgttacctccccctattactccgacctcatgtttatgatcaaaaccaccataataagtccaagtcttcaacttaaagacaaaagtggaag 100  Q
    |||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  15015287 cagttaaactcgttaccttcccctattacaccaacctcatgtttctgatcaaaaccaccctaataagtccaagtcttcaccttaaagacaaaagtggaag 15015386  T
Q  101 actt 104  Q
    ||||    
T  15015387 actt 15015390  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 15009030 - 15009121
Alignment:
Q  20 cccctattactccgacctcatgtttatgatcaaaaccaccataataagtccaagtcttcaacttaaagacaaaagtggaagacttcaatgag 111  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||| ||||||| ||||||    
T  15009030 cccctattactccaacctcatgtttctgatcaaaaccacaataataagtctaagtcttcaccttaaagacaaaagtgaaagactttaatgag 15009121  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 15009136 - 15009211
Alignment:
Q  148 ttacaaatgggaatatcaattacaatgcattataaatatcacctacatctcccattataatgcattcatcatgata 223  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  15009136 ttacaagtgggaatatcaattacaatgcattataaatatcacctaaatctcccattgtaatgcattcatcatgata 15009211  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 15023147 - 15023238
Alignment:
Q  20 cccctattactccgacctcatgtttatgatcaaaaccaccataataagtccaagtcttcaacttaaagacaaaagtggaagacttcaatgag 111  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||| ||||||| ||||||    
T  15023147 cccctattactccaacctcatgtttctgatcaaaaccacaataataagtctaagtcttcaccttaaagacaaaagtgaaagactttaatgag 15023238  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 15023253 - 15023328
Alignment:
Q  148 ttacaaatgggaatatcaattacaatgcattataaatatcacctacatctcccattataatgcattcatcatgata 223  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  15023253 ttacaagtgggaatatcaattacaatgcattataaatatcacctaaatctcccattgtaatgcattcatcatgata 15023328  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 14501601 - 14501694
Alignment:
Q  3 gttaaactcgttacctccccctattactccgacctcatgtttatgatcaaaaccaccataataagtccaagtcttcaacttaaagacaaaagtg 96  Q
    ||||||||| ||| ||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||  ||||||||   ||||||||||||||    
T  14501601 gttaaactcattatctcgccctattactccaacctcgtgtttctgatcaaaaccaccataataagtctcagtcttcatactaaagacaaaagtg 14501694  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 14535167 - 14535074
Alignment:
Q  3 gttaaactcgttacctccccctattactccgacctcatgtttatgatcaaaaccaccataataagtccaagtcttcaacttaaagacaaaagtg 96  Q
    ||||||||| ||| ||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||  ||||||||   ||||||||||||||    
T  14535167 gttaaactcattatctcaccctattactccaacctcgtgtttctgatcaaaaccaccataataagtctcagtcttcatactaaagacaaaagtg 14535074  T

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Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 15030248 - 15030308
Alignment:
Q  148 ttacaaatgggaatatcaattacaatgcattataaatatcacctacatctcccattataat 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  15030248 ttacaagtgggaatatcaattacaatgcattataaatatcacctaaatctcccatcataat 15030308  T

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Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 14501727 - 14501782
Alignment:
Q  169 acaatgcattataaatatcacctacatctcccattataatgcattcatcatgatat 224  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  14501727 acaatgcattataaatatcacctacatttcccattataatgcattcatcataatat 14501782  T

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Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 14535039 - 14534991
Alignment:
Q  171 aatgcattataaatatcacctacatctcccattataatgcattcatcat 219  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14535039 aatgcattataaatatcacctacatttcccattataatgcattcatcat 14534991  T

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Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 15030170 - 15030239
Alignment:
Q  23 ctattactccgacctcatgtttatgatcaaaaccaccataataagtccaagtcttcaacttaaagacaaaagt 95  Q
    |||||||||| ||||||||||| |||||||||||||   |||||||| ||||||||| |||||||||||||||    
T  15030170 ctattactccaacctcatgtttctgatcaaaaccac---aataagtctaagtcttcaccttaaagacaaaagt 15030239  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 15015581 - 15015623
Alignment:
Q  177 ttataaatatcacctacatctcccattataatgcattcatcat 219  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  15015581 ttataaatatcacctgcatctcccattataatgcattcatcat 15015623  T

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