View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_6 (Length: 640)
Name: NF12029_low_6
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 15 - 622
Target Start/End: Complemental strand, 17408339 - 17407735
Alignment:
| Q |
15 |
atgaacctattaatcaaaaatcacaaaaaataaagatggtcacaatctatacacgtaaaaatgcaaagtatgaatcaagattaacataattaatcaaagt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |
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| T |
17408339 |
atgaacctattaatcaaaaatcacaaaaaataaagatggtcacaatctatacacataaaaatgcaaacaatgaatcaagattaacat---taatcaaagt |
17408243 |
T |
|
| Q |
115 |
aattaatttttgtttaagtactcaccgagcttcgaacgaccattgatggatttgcattatggttacaaagatcaagagaaacttccatgccagaatttcc |
214 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17408242 |
aattaatttttgtttaagtactcaccgaacttcgaacaaccattgatggatttgcattatggttacaaagatcaagagaaacttccatgccagaatttcc |
17408143 |
T |
|
| Q |
215 |
acatccaacaacaagaacattttttccactataattcacaccagatttatagtcacaagcatgcataacatttccaccaaaatcactcaaaccttcaaat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17408142 |
acatccaacaacaagaacattttttccactataattcacaccagatttatagtcacaagcatgcataacatttccaccaaaatcactcaaaccttcaaat |
17408043 |
T |
|
| Q |
315 |
tccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatattcaacttcaacaactttatcactttttatcctattgctct |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17408042 |
tccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatactcaacttcaacaactttatcactttttatcctattgctct |
17407943 |
T |
|
| Q |
415 |
taatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttggtgttatgttaaagtttttcgcatatgattcgaggta |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17407942 |
taatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttggtgttatgttaaagtttttcgcatatgattcgaggta |
17407843 |
T |
|
| Q |
515 |
acttatgaactgaaattttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagtttaagacga |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
17407842 |
acttatgaactgaaattttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttaggaagatgaagtttaagacga |
17407743 |
T |
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| Q |
615 |
tcgtaggt |
622 |
Q |
| |
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|||||||| |
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| T |
17407742 |
tcgtaggt |
17407735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 282
Target Start/End: Original strand, 29857465 - 29857580
Alignment:
| Q |
167 |
tgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagatttatag |
266 |
Q |
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||||||||| || |||||||||||||||| |||||| |||||||| ||||| |||||||| | ||| || || || ||| || | |||| |||||||| |
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| T |
29857465 |
tgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctgatttataa |
29857564 |
T |
|
| Q |
267 |
tcacaagcatgcataa |
282 |
Q |
| |
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||||||||||| |||| |
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| T |
29857565 |
tcacaagcatgaataa |
29857580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 29857847 - 29857896
Alignment:
| Q |
558 |
gggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
607 |
Q |
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||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
29857847 |
gggaatggaaagttaggtagttgacagaattgtttagggaggtgaagttt |
29857896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 29857640 - 29857684
Alignment:
| Q |
339 |
tcaccggtagcaaccacaagccacctacaaatatattcaacttca |
383 |
Q |
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||||| ||||||||||||||| ||||||||||||| ||||||||| |
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| T |
29857640 |
tcaccagtagcaaccacaagcgacctacaaatatactcaacttca |
29857684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 888402 - 888460
Alignment:
| Q |
168 |
gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac |
226 |
Q |
| |
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|||| ||| ||||||||||| | | |||||||||| || |||||||||||||||||||| |
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| T |
888402 |
gcatcatgattacaaagatccaaacaaacttccatacctgaatttccacatccaacaac |
888460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 39733423 - 39733482
Alignment:
| Q |
182 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
241 |
Q |
| |
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||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
39733423 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
39733482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 39733577 - 39733624
Alignment:
| Q |
336 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
383 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39733577 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39733624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 39839381 - 39839334
Alignment:
| Q |
336 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
383 |
Q |
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||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39839381 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39839334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 39839535 - 39839476
Alignment:
| Q |
182 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
241 |
Q |
| |
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||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
39839535 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
39839476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 607
Target Start/End: Complemental strand, 39839210 - 39839134
Alignment:
| Q |
531 |
tttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
607 |
Q |
| |
|
|||||||||||||||||||| | ||||| | ||||| || ||||||||||| |||||||| || ||||||||||| |
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| T |
39839210 |
tttgaagggtattcagggaaatcttcaggcattggaaggttaggtagttgacagaattgttttggaaggtgaagttt |
39839134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 607
Target Start/End: Complemental strand, 31290123 - 31290047
Alignment:
| Q |
531 |
tttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
607 |
Q |
| |
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|||||||||||||||||||| | ||| | | ||||| || ||||||||||| ||| ||||||| ||||||||||| |
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| T |
31290123 |
tttgaagggtattcagggaaatcttcaagcattggaaggttaggtagttgacataatggtttaggaaggtgaagttt |
31290047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 50667920 - 50667862
Alignment:
| Q |
168 |
gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac |
226 |
Q |
| |
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|||| ||||||||||||||| | | |||||||||| |||||||| ||||| |||||||| |
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| T |
50667920 |
gcatcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaac |
50667862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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