View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_7 (Length: 619)
Name: NF12029_low_7
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 34692204 - 34691860
Alignment:
| Q |
36 |
attccatatgacaacattgttgtgaaaaattgcggcgtccacattacattttatcacacctggaggcggtttggaccatggtataagttgattccagttt |
135 |
Q |
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| T |
34692204 |
attccatatgacaacattgttgtgaaaaattgcggcgtccacatcacattttatcacacctggaggcggtttggaccatggtataagttgattccagttt |
34692105 |
T |
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| Q |
136 |
ggcatctgcaatttagctatttgcatgca-gaccgttcatacagtgtgtcctttactcgagagataataacaacagttgggttgtcggtagattcccaaa |
234 |
Q |
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| T |
34692104 |
ggcatctgcaatttagctatttgcatgcaagaccgttcatacagagtgtcctttactcgagagataataacaacagttgggttgtcagtagactctcaaa |
34692005 |
T |
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| Q |
235 |
gctttgcgttgtggctcttccatccaaagtaccattgcaacaatctgctgctgttgaactgttatccttctcaagaaatcaaataacaaagtagagaaat |
334 |
Q |
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| T |
34692004 |
gctttgcgttgtggctcttccatccaaagtaccattgcaacaatctgctgttgttgaactgttatccttctcaagaaatcaaataacaaagtagagaaat |
34691905 |
T |
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| Q |
335 |
tgttagctcaacagttcccggattaagttccctataccaatattc |
379 |
Q |
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| T |
34691904 |
tgttagctcaacagttctcggattaagttccccataccaatattc |
34691860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 378 - 604
Target Start/End: Complemental strand, 34691838 - 34691612
Alignment:
| Q |
378 |
tcacacacaaagaagaggtgcatgtggtattcagccaataactcgcataccacacaagaatcgtcgcatggaatacctcaagtagtgtggtaggacctca |
477 |
Q |
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| T |
34691838 |
tcacacacaaagaagaggtgcatatggtattcagccaataactcgcataccacacaagaatcgtcgcatggaatacctcaagtagtgtggtaggacctca |
34691739 |
T |
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| Q |
478 |
cccttaaaggaatttgaacattcaatatgctcacccaagggaaattatgatgcgcaggagcatgggggaggagcagatctacacataatctgtaagcaga |
577 |
Q |
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| T |
34691738 |
cccttgaaggaatttgaacattcaatatgctcacccaagggaaattatgatgcgcaggagcatgggggaggagcagatctacacataatctgtaagcaga |
34691639 |
T |
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| Q |
578 |
ttttactgaatactccccgtttgaagt |
604 |
Q |
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| T |
34691638 |
ttttactgaatactccccgtttgaagt |
34691612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 33704011 - 33704156
Alignment:
| Q |
22 |
aattacgaaaacaaattccata-----tgacaacattgttgtgaaaaattgcggcgtccacattacattttatcacacctggaggcggtttggaccatgg |
116 |
Q |
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| T |
33704011 |
aattacgaaaacaaatttcataaccggtgataacattgtcgtggaaaattgcggcgtccacgttacattttgtcacacttgaaggcggttttgaccatgt |
33704110 |
T |
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| Q |
117 |
tataagttgattccagtttggcatctgcaatttagctatttgcatgca |
164 |
Q |
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| T |
33704111 |
tgtaagttgattccgatttggca--tgcaatttagctctttgcatgca |
33704156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 378 - 456
Target Start/End: Original strand, 33704284 - 33704362
Alignment:
| Q |
378 |
tcacacacaaagaagaggtgcatgtggtattcagccaataactcgcataccacacaagaatcgtcgcatggaatacctc |
456 |
Q |
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|||||||| |||||||||||||||||| ||||| ||||||| || ||||||||||||||||||| |||||||||||||| |
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| T |
33704284 |
tcacacacgaagaagaggtgcatgtgggattcaaccaataattcacataccacacaagaatcgttgcatggaatacctc |
33704362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 33704187 - 33704262
Alignment:
| Q |
309 |
gaaatcaaataacaaagtagagaaattgttagctc-----aacagttcccggattaagttccctataccaatattc |
379 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
33704187 |
gaaatcaaataataaagtagagaaattgttagctcggctcaacagttcccggattaagttccccataccaatattc |
33704262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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