View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_9 (Length: 571)
Name: NF12029_low_9
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 13750334 - 13750596
Alignment:
| Q |
1 |
ggcattttgcaactcttttgatatatgatcgtatcgttcggctaaagctcggtaagctttgtatgtttcttcgacaaagcttattagctctggtctcttt |
100 |
Q |
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| T |
13750334 |
ggcattctgcaactcttttgatatatgatcgtatcgttcggctaaagctcggtaagctttgtatgtttcttcgacaaagcttattagctctggtctcttt |
13750433 |
T |
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| Q |
101 |
ttgtaatacatttcagctctctttgcaaatgagtccccatcttcctctatgagttttatagcactctgcaccttttcctccatatctgcagttttgcata |
200 |
Q |
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| T |
13750434 |
ttgtaatacatttcagctctctttgcaaatgagtccccatcttcctctatgagttttatagcactctgcaccttttcctccatatctgcagttttgcata |
13750533 |
T |
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| Q |
201 |
tatatttcagtttgtcatctaccaaagacttacatataaaagtacactgttaatcttacatta |
263 |
Q |
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| T |
13750534 |
tacatttcagtttgtcatctaccaaagacttacatataaaagtacactgttaatcttaaatta |
13750596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 295 - 554
Target Start/End: Original strand, 13750589 - 13750847
Alignment:
| Q |
295 |
ttaaattaatcttctaattacaataagataatcagtgtccccagttacata-acacataggataaaggtaagcacgtattaaaatcctaaaatcatagaa |
393 |
Q |
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| T |
13750589 |
ttaaattaatcttctaattacaataagataatcagtgtccctagttacatacacacataggatcaaggtaagca--tattaaaatcctaaaatcatagaa |
13750686 |
T |
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| Q |
394 |
atgactttaaatcagtacaatttattttaaaattaagatgtacaacaagatcaaagattataatttgtgaaaagcatcataataattggagttgttgaat |
493 |
Q |
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| T |
13750687 |
atgacttcaaatcagtacaatttattttaaaattaagatgtacaacaagatcaaagtttataatttgtgaaaagcatcataataattggagttgttgaat |
13750786 |
T |
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| Q |
494 |
gaaaaacattgaatgcttttgattagttgaggtcaaattttggaaattggagtaagcagag |
554 |
Q |
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| T |
13750787 |
gaaaaacattgaatgcttttgattagttgaggtcaaattttggaaattggagtaagcagag |
13750847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 28753917 - 28754106
Alignment:
| Q |
1 |
ggcattttgcaactcttttgatatatgatcgtatcgttcggctaaagctcggtaagctttgtatgtttcttcgacaaagcttattagctctggtctcttt |
100 |
Q |
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||||||||| ||||| |||||| |||||||| | |||||||||| |||||| || | | | |||||| || ||| |||||| |||||||||| | |
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| T |
28753917 |
ggcattttgtaactccgttgataagtgatcgtacctatcggctaaagatcggtatgcgcggaacgattcttcaacgaagtttattacctctggtctccta |
28754016 |
T |
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| Q |
101 |
ttgtaatacatttcagctctctttgcaaatgagtccccatcttcctctatgagttttatagcactctgcaccttttcctccatatctgca |
190 |
Q |
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||||||||||||| ||||| |||||||||||||| || ||||| |||| || |||| | || || || |||||||||||||||||| |
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| T |
28754017 |
ttgtaatacatttgtgctctttttgcaaatgagtctccctcttcttctagaagctttaaaacagattgtactttttcctccatatctgca |
28754106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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