View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_high_12 (Length: 557)
Name: NF1202_high_12
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 29 - 551
Target Start/End: Original strand, 29792894 - 29793416
Alignment:
| Q |
29 |
aaaaagatcttttagatactggattgttgtttagcaggaaactgaaaattgaaattatgtagggaggcgggaatagtttccaatatttcaacaccttcta |
128 |
Q |
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| T |
29792894 |
aaaaagatctttttgatactggattgttgtttagcaggaaactgaaaattgaaattatgtagggaggcgggaatagtttccaatatttcaacaccttcta |
29792993 |
T |
|
| Q |
129 |
gttcaaacaactaaagtcttcctaatacacgacacaacacaagcatgttctgatcataaaaatagaaaatgccacataatacaaactattatttannnnn |
228 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29792994 |
gttcaaacaactaaagtcttcctgatacacgacacaacacaagcatgttctgatcataaaaatagaaaatgccacataatacaaactattattttttttt |
29793093 |
T |
|
| Q |
229 |
nngaataactagcaagtaggagaagtcgaagacattgatgataaaaaatgacaacaacaaacacaccaaggaacgattcatgagtatcatattttctatt |
328 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29793094 |
ttgaataactagcaagtaggagaagttgaagacattgatgataaaaaatgacaacaacaaacacaccaaggaacgattcatgagtatcatattttctatt |
29793193 |
T |
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| Q |
329 |
tattggttttgtcaactgtgaaacttaatgatcataagtatcagtttatctctgtggctaatttagtatggaaatttctcttctaacacacacctgactt |
428 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29793194 |
tattggatttgtcaattgtgaaacttaatgatcataagtatcagtttatctctgtggctaatttagtatggaaatttctcttctaacacacacctgactt |
29793293 |
T |
|
| Q |
429 |
attcatagctctaacagaaggtgaacgaaatgaatccatctcaaaagttgatacgtcttgattgatccttgaagagttgccgcccttcttagtcccaacc |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29793294 |
attcatagctctaacagaaggtgaacgaaatgaatccatctcaaaagttgatacgtcttgattgatccttgaagagttgccgcccttcttagtcccaacc |
29793393 |
T |
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| Q |
529 |
ataacatcatcagttctctctgc |
551 |
Q |
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||||||||||||||||||||||| |
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| T |
29793394 |
ataacatcatcagttctctctgc |
29793416 |
T |
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