View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_high_20 (Length: 471)
Name: NF1202_high_20
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 38467912 - 38468345
Alignment:
| Q |
1 |
cataggatgatgaatataaaacaaatacggataactaaattcatgtgttgtatttatagaaatcaccggaaagcaannnnnnnagcatcagctaagcaga |
100 |
Q |
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| T |
38467912 |
cataggatgatgaatataaaacaaatacggataactaaattcatgtgttgtatttatagaaatcaccggaaagcaatttttttagcatcagctaagcaga |
38468011 |
T |
|
| Q |
101 |
gagttatgcacatgcaaaataattgtctaattaacagtatttggtattatagagctcttgtcacacactaagaatcaggcaagcgttagattgttacatg |
200 |
Q |
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| T |
38468012 |
gagttatgcacatgcaaaataattgtttaattaacagtatttggtattatagagctcttgtcacacactaagaatcacgcaagcgttagattgttgcatg |
38468111 |
T |
|
| Q |
201 |
taaaaatattattggtccaacatagacccataaaagtgtgtgatacaaatcttagatcatataatcaaagttgtgtaagtacnnnnnnnnaacagtttat |
300 |
Q |
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| T |
38468112 |
taaaaa---tattggtccaacatagacccataaaagtgtgtgatacaaatcttagatcatataatcaaagttgtgtaagtacttttttttaacagtttat |
38468208 |
T |
|
| Q |
301 |
tttatctattaaacatacataaacacattattttagttgtgttcacttgctttggaggtccttaatttacttttnnnnnnnttaaataggtctcttaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38468209 |
tttatctattaaacatacataaacacattattttagttgtgttcacttgctttggaggtccttaatttacttttaaaaaaattaaataggtctcttaaaa |
38468308 |
T |
|
| Q |
401 |
taagaggcttcaaccaaataacgaattgttcataatc |
437 |
Q |
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| T |
38468309 |
taagagacttcaaccaaataacgaattgttcagaatc |
38468345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 329 - 431
Target Start/End: Original strand, 38448418 - 38448520
Alignment:
| Q |
329 |
tattttagttgtgttcacttgctttggaggtccttaatttacttttnnnnnnnttaaataggtctcttaaaataagaggcttcaaccaaataacgaattg |
428 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
38448418 |
tattatagttgtgttcacttgctttggaggtacttaatttacttttaaaaaaattaaataggtctcttaaaaaaagcggcttcaaccaaataacgaattg |
38448517 |
T |
|
| Q |
429 |
ttc |
431 |
Q |
| |
|
||| |
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|
| T |
38448518 |
ttc |
38448520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 329 - 431
Target Start/End: Complemental strand, 38549853 - 38549751
Alignment:
| Q |
329 |
tattttagttgtgttcacttgctttggaggtccttaatttacttttnnnnnnnttaaataggtctcttaaaataagaggcttcaaccaaataacgaattg |
428 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
38549853 |
tattatagttgtgttcacttgctttggaggtccttaatttacttttaaaaaaattaaacaggtctcttaaaaaaagcggcttcaaccaaataacaaattg |
38549754 |
T |
|
| Q |
429 |
ttc |
431 |
Q |
| |
|
||| |
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|
| T |
38549753 |
ttc |
38549751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 38448365 - 38448415
Alignment:
| Q |
84 |
agcatcagctaagcagagagttatgcacatgcaaaataattgtctaattaa |
134 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||||| ||||||||||| |
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|
| T |
38448365 |
agcatcagctaaggagagagttatacacatccaaaataagtgtctaattaa |
38448415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 38549906 - 38549856
Alignment:
| Q |
84 |
agcatcagctaagcagagagttatgcacatgcaaaataattgtctaattaa |
134 |
Q |
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|||||||||||||||||||||||| ||||| |||||||| |||| |||||| |
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| T |
38549906 |
agcatcagctaagcagagagttatacacatccaaaataagtgtccaattaa |
38549856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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