View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_high_21 (Length: 468)
Name: NF1202_high_21
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 10 - 468
Target Start/End: Complemental strand, 45975671 - 45975196
Alignment:
| Q |
10 |
ccacagatacggattcatccccagtatgttgtaaaatccatcacttatcttatccgtatacgacaagcacccactcacctgataaccaaaaatggcatat |
109 |
Q |
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| T |
45975671 |
ccacagatacggattcatccccagtatgttgtaaaatccatcacttatcttatccgtatatgacaagcacccactcacctgataaccaaaaatggcatat |
45975572 |
T |
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| Q |
110 |
ttaatcacacaaatattattgaacgctagttgcaatatggttttaagttgttatctgaagctgcttcaactgcaatataaaagattttgagatctctgca |
209 |
Q |
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| T |
45975571 |
ttaatcacacaaatattaatgaacgctagttgcaatatggttttaagttgttatctgcagctgcttcaactgcaatataaaagattttgagatctctgca |
45975472 |
T |
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| Q |
210 |
accacatggcatttgtaaatttgattgcatcagcaatgttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtcaatatcac |
309 |
Q |
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| T |
45975471 |
accacatggcatttgtaaatttgattgcatcaacaatgttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtcaatatcac |
45975372 |
T |
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| Q |
310 |
aaatcacaatcgccatgtcgttgcagattttgaagtctatgcatagtttaac-----------------cgcgatttaaaaccattggtgcgatggtgag |
392 |
Q |
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| T |
45975371 |
aaatcacaatcgccatgtcgttgcagattttgaagtctatgcatagtttaaccgcgtaagagccacaaccgcgatttaaaaccattggtgcgatggtgag |
45975272 |
T |
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| Q |
393 |
acgtagttaaaaaatgaaatggttgtgcaatcttgtttagttttgtacccatagacgataagaaacagactcagca |
468 |
Q |
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| T |
45975271 |
atgtagttaaaaaatgaaatggttgtgcaatcttgtttagttttgtacccatagacgataagaaacagactcagca |
45975196 |
T |
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