View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1202_high_23 (Length: 449)
Name: NF1202_high_23
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 93 - 424
Target Start/End: Complemental strand, 17613526 - 17613193
Alignment:
| Q |
93 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagaatcgcataacttaataaactt |
192 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| || | |
|
|
| T |
17613526 |
tatgctttggtgatgcccattgagtatcaggtggagtagtttactacagaatcacctagaacaaaactggttggttagaatcgcataactgaatacacat |
17613427 |
T |
|
| Q |
193 |
ataagtaattatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtcc-nnnnn |
291 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17613426 |
ataagtagttatcaaagttgaaaaaggttttattactgtgtgttgagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtccaaaaaa |
17613327 |
T |
|
| Q |
292 |
nngtggtagaataacattagctt-taaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaa |
390 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17613326 |
aagtggtagaatatcattagcttataaaggataaaggaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaa |
17613227 |
T |
|
| Q |
391 |
atatttcaatttcacctttagtccttgtaatttg |
424 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
17613226 |
atatttcaaattcacctttagtccttgtaatttg |
17613193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 93 - 424
Target Start/End: Complemental strand, 17626711 - 17626378
Alignment:
| Q |
93 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagaatcgcataacttaataaactt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| || | |
|
|
| T |
17626711 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagagtcccataactgaatagacat |
17626612 |
T |
|
| Q |
193 |
ataagtaattatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtcc-nnnnn |
291 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17626611 |
ataagtagttatcaaagctgaaaaaggttttattactgtgtgtcgagtcgactgatgatcgtggtgacacgcttcccttttctgtatcaagtccaaaaaa |
17626512 |
T |
|
| Q |
292 |
nngtggtagaataacattagctttaaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgata--ctgatagatatcctta |
389 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
17626511 |
aagtggtacaatatcattagccataaaggataaagaaatgtattaactgaaatatc-cagaaggtatttaaatatcgtgataggcgcatagatatcctta |
17626413 |
T |
|
| Q |
390 |
aatatttcaatttcacctttagtccttgtaatttg |
424 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |
|
|
| T |
17626412 |
aatatttcaatttcacctctagtctttgtaatttg |
17626378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 93 - 424
Target Start/End: Complemental strand, 17671107 - 17670774
Alignment:
| Q |
93 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagaatcgcataacttaataaactt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||| || | |
|
|
| T |
17671107 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggtttgagtcccataactgaatagacat |
17671008 |
T |
|
| Q |
193 |
ataagtaattatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtcc-nnnnn |
291 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17671007 |
agaagtagttatcaaagctgaaaaaggttttattactgtgtgtagagtcgactgatgatcgtggtgacacgcttcccttttctgtatcaagtccaaaaaa |
17670908 |
T |
|
| Q |
292 |
nngtggtagaataacattagctttaaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgata--ctgatagatatcctta |
389 |
Q |
| |
|
|||||| | || ||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
17670907 |
aagtggtacagtatcattagccataaaggataaagaaatgtataaactgaaatatc-cagaaggtatttaaatatcgtgataggcgcatagatatcctta |
17670809 |
T |
|
| Q |
390 |
aatatttcaatttcacctttagtccttgtaatttg |
424 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |
|
|
| T |
17670808 |
aatatttcaatttcacctctagtctttgtaatttg |
17670774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 17693259 - 17693093
Alignment:
| Q |
93 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagaatcgcataacttaataaactt |
192 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
17693259 |
tatggtttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagaatcgcataactgaataaacat |
17693160 |
T |
|
| Q |
193 |
ataagtaattatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtga |
259 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17693159 |
ataagtagttatcaaagttgaaaaaggttttattactgtgtgtggagtcgattgatgatcgtggtga |
17693093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 294 - 424
Target Start/End: Complemental strand, 17692977 - 17692848
Alignment:
| Q |
294 |
gtggtagaataacattagctttaaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaaata |
393 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17692977 |
gtggtagaatatcattagctataaaggataaagaaatgtattaactgaaatatca-agaaggtatttaaatatcgtgatagggatagatatccttaaata |
17692879 |
T |
|
| Q |
394 |
tttcaatttcacctttagtccttgtaatttg |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
17692878 |
tttcaatttcacctttagtccttgtaatttg |
17692848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17613687 - 17613628
Alignment:
| Q |
1 |
taggttctgcatgatatatgtctgttagcaatgaaattaaggcgtaaagacaccgtcatc |
60 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
17613687 |
taggttctgcgtgatatatgtccgttagcactgaaattaaggcgtaaagacaccatcatc |
17613628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17671268 - 17671209
Alignment:
| Q |
1 |
taggttctgcatgatatatgtctgttagcaatgaaattaaggcgtaaagacaccgtcatc |
60 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||| ||||||| ||||||||| ||||| |
|
|
| T |
17671268 |
taggttctgcatgatagatgtccgttagcactgaaactaaggcgaaaagacaccatcatc |
17671209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 17613569 - 17613540
Alignment:
| Q |
65 |
aaggttaggtcactcttcacaagcaccata |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17613569 |
aaggttaggtcactcttcacaagcaccata |
17613540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 17626754 - 17626725
Alignment:
| Q |
65 |
aaggttaggtcactcttcacaagcaccata |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17626754 |
aaggttaggtcactcttcacaagcaccata |
17626725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 17671150 - 17671121
Alignment:
| Q |
65 |
aaggttaggtcactcttcacaagcaccata |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17671150 |
aaggttaggtcactcttcacaagcaccata |
17671121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 17693417 - 17693361
Alignment:
| Q |
4 |
gttctgcatgatatatgtctgttagcaatgaaattaaggcgtaaagacaccgtcatc |
60 |
Q |
| |
|
||||||||||||| | | | ||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
17693417 |
gttctgcatgatagacgcccgttagcactgaaattaaggcataaagacaccatcatc |
17693361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University