View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_high_24 (Length: 444)
Name: NF1202_high_24
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 341
Target Start/End: Complemental strand, 10252494 - 10252156
Alignment:
| Q |
12 |
gatagaaagtagaagttatattcct--gattttcaatcttgagattcagatatgattgtg-cttctactttctatcgt------gttatgagtgatgtct |
102 |
Q |
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| T |
10252494 |
gatagaaaatagaagttataatcctctgattttcaatcttgagattcagatatgattgtggcttctactttctatcattaattcgttataagtgatgtct |
10252395 |
T |
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| Q |
103 |
ttattatgtgagaatcaaatattttaaaatccttataatttataannnnnnnaacctaaaaatgaatgtaaaaactataacttacaattatattataagt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10252394 |
ttattatgtgagaatcaaatattttaaaatccttataattcataatttttttaacctaaaaatgaatgtgaaaactataacttacaattatattataagt |
10252295 |
T |
|
| Q |
203 |
ggtagcatgaacttactaaacctttgatctatgctactaagttatattgcctcttaaactaagtgctctctccattacgttttaccttagaatcaaatca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10252294 |
ggtagcatgaacttactaaacctttgatctatgctactaagttatattgcctcttaaactaagtgctctctccattacgttttaccttagaatcaaatca |
10252195 |
T |
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| Q |
303 |
tattttcagtagtccatatcatgaatagcatagaggggt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
10252194 |
tattttcagtagtccatatcatgaatagcatagaggggt |
10252156 |
T |
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