View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_high_28 (Length: 392)
Name: NF1202_high_28
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 363
Target Start/End: Complemental strand, 45975219 - 45974870
Alignment:
| Q |
14 |
agacgataagaaacagactcagcatcccaattttcagtgccaggagtgagaacaggctccgacacaagacttgccaaagaagcaagcctcttcgctaacg |
113 |
Q |
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| T |
45975219 |
agacgataagaaacagactcagcatcccaattttcagtgccaggagtgagaacaggctccgacacaagacttgccaaagaagcaagcctcttcgctaacg |
45975120 |
T |
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| Q |
114 |
taagctgcaggatatagctttcttcacacttcttcaccaacccgtctttgttttcttcatcttccttctgcctcctcgcagtggttgctggaatggtgga |
213 |
Q |
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| T |
45975119 |
taagctgcaggatatagctttcttcacacttcttcaccaacccgtctttgttttcatcatcttccttctgcctcctcgcagtggttgctggaatggtgga |
45975020 |
T |
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| Q |
214 |
aacttgagacgactgcgtttcctctttaatgtcactggaaaacaaactccctgcatagctactgtcgctggatagcctcggaagtgaaacttgacggtcg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45975019 |
aacttgagacgactgcgtttcctctttaatgtcactggaaaacaaactccctgcatagctactgtcgctcgatagcctcggaagtgaaacttgacggtcg |
45974920 |
T |
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| Q |
314 |
aaattccggtcgattgcggtatcattgacggctgtctctggctgagaatg |
363 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
45974919 |
aaattccggtcaattgcggtgtcattgacggctgtctctggctgagaatg |
45974870 |
T |
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