View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_high_35 (Length: 335)
Name: NF1202_high_35
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 29 - 328
Target Start/End: Original strand, 6057409 - 6057708
Alignment:
| Q |
29 |
ataaggcccttacaatccaacatctccaaactagaaaatgtaagtagtgttagtgacttaagggaagcatgtaacaaaccttcctttgggaaagatttga |
128 |
Q |
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| T |
6057409 |
ataaggcccttacaatccaacatttccaaactagaaaatgtaagtagtgttagagacttaagggaagcatgtaacaaaccttcctttgggaaagatttga |
6057508 |
T |
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| Q |
129 |
tcccatcacatggaccttgaattgttacatcagtaagcatgttcatggaaggccaggacaggccagtaagtagtttctcgcaattcatgatgcgaatcga |
228 |
Q |
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| T |
6057509 |
tcccatcacatggaccttgaattgttacatcagtaagcatgtccatggaaggccaggacagaccagtaagtagtttctcgcaattcatgatgcgaatcga |
6057608 |
T |
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| Q |
229 |
tctcaacttaggtggcataccactttcgggaaatgattcaatttctggacagttttctagtcgaaaatattctaactttggaagaagaatgttcatctca |
328 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6057609 |
tctcaacttaggtggcataccactttcggggaatgattcaatttctggacagttttctagtcggaaatattctaactttggaagaagaatgttcatctca |
6057708 |
T |
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