View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1202_high_38 (Length: 295)

Name: NF1202_high_38
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1202_high_38
NF1202_high_38
[»] chr1 (2 HSPs)
chr1 (11-250)||(9111186-9111425)
chr1 (76-179)||(9112362-9112461)
[»] chr2 (1 HSPs)
chr2 (178-250)||(21189636-21189708)
[»] scaffold0028 (1 HSPs)
scaffold0028 (178-244)||(110362-110428)
[»] chr3 (1 HSPs)
chr3 (178-244)||(16366239-16366305)
[»] chr4 (4 HSPs)
chr4 (57-179)||(4884090-4884210)
chr4 (78-179)||(4905319-4905417)
chr4 (78-179)||(4924585-4924683)
chr4 (79-167)||(4646172-4646257)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 9111186 - 9111425
Alignment:
Q  11 acaatatgaaaagagatgtgtcaaagatgtcctactactgtctaatttaagcagcataatgtgataacacattaaccactctaaaaattcaaacaacaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9111186 acaatatgaaaagagatgtgtcaaagatgtcctactactgtctaatttaagcagcataatgtgataacacattaaccactctaaaaattcaaacaacaca 9111285  T
Q  111 ataataactccaagtacagaaatttgcaatggatccaccacattccatgatctcaaactctatccacattgacatgtgaattatctcaaaataacaatca 210  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9111286 ataataactccaagtacagaaatttgcaatggatccgccacattccatgatctcaaactctatccacattgacatgtgaattatctcaaaataacaataa 9111385  T
Q  211 gtataaacatatgaacattaaaatcaataagcaatagaga 250  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  9111386 gtataaacatataaacattaaaatcaataagcaaaagaga 9111425  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 9112362 - 9112461
Alignment:
Q  76 aacacattaaccactctaaaaattcaaacaacacaataataactccaagtacagaaatttgcaatggatccaccacattccatgatctcaaactctatcc 175  Q
    |||||||||||||| | ||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |||||||    
T  9112362 aacacattaaccacccaaaaaattcaaacaaca---taataactccaagtacaggaatttgcaatggatccaccaca-tccatgatcacaaattctatcc 9112457  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 21189708 - 21189636
Alignment:
Q  178 attgacatgtgaattatctcaaaataacaatcagtataaacatatgaacattaaaatcaataagcaatagaga 250  Q
    |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| |||||    
T  21189708 attgacatgtgaattatctcaaaataacaatcagcataaacatataagcattaaaatcaataagcaaaagaga 21189636  T

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Target: scaffold0028 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 110428 - 110362
Alignment:
Q  178 attgacatgtgaattatctcaaaataacaatcagtataaacatatgaacattaaaatcaataagcaa 244  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| | |||||||||||||||||||    
T  110428 attgacatgtgaattatctcaaaataaaaatcagcataaacatataagcattaaaatcaataagcaa 110362  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 16366239 - 16366305
Alignment:
Q  178 attgacatgtgaattatctcaaaataacaatcagtataaacatatgaacattaaaatcaataagcaa 244  Q
    |||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||    
T  16366239 attgacatgtgaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaa 16366305  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 4884210 - 4884090
Alignment:
Q  57 ttaagcagcataatgtgataacacattaaccactctaaaaattcaaaca-acacaat-aataactccaagtacagaaatttgcaatggatccaccacatt 154  Q
    ||||||||||||| ||||||| ||||||| ||||| ||||||  ||||| ||||||| |||||||  || |||||| |||||||||||    ||||||||    
T  4884210 ttaagcagcataacgtgataatacattaatcactcaaaaaataaaaacagacacaatcaataactgtaactacagacatttgcaatgg----accacatt 4884115  T
Q  155 ccatgatctcaaactctatccacat 179  Q
    |||||||| |||| |||||||||||    
T  4884114 ccatgatcccaaattctatccacat 4884090  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 4905417 - 4905319
Alignment:
Q  78 cacattaaccactctaaaaattcaaacaacacaat-aataactccaagtacagaaatttgcaatggatccaccacattccatgatctcaaactctatcca 176  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||  |||||||| |||  ||||||    |||||||||||||||| |||| ||||||||    
T  4905417 cacattaaccactcaaaaaatttaaacaacacaatcaataactcttagtacagacattaacaatgg----accacattccatgatcccaaattctatcca 4905322  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 4924683 - 4924585
Alignment:
Q  78 cacattaaccactctaaaaattcaaacaacacaat-aataactccaagtacagaaatttgcaatggatccaccacattccatgatctcaaactctatcca 176  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||  |||||||| |||  ||||||    |||||||||||||||| ||||  |||||||    
T  4924683 cacattaaccactcaaaaaatttaaacaacacaatcaataactcttagtacagacattaacaatgg----accacattccatgatcccaaatactatcca 4924588  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 4646172 - 4646257
Alignment:
Q  79 acattaaccactctaaaaattcaaacaacacaat-aataactccaagtacagaaatttgcaatggatccaccacattccatgatctcaaa 167  Q
    ||||||||||||  ||||||| |||||||||||| |||||||   |||||||| |||| ||||||    |||||||||||||||| ||||    
T  4646172 acattaaccactacaaaaatttaaacaacacaatcaataactgttagtacagacatttacaatgg----accacattccatgatcccaaa 4646257  T

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