View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_high_40 (Length: 287)
Name: NF1202_high_40
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 3094193 - 3094010
Alignment:
| Q |
1 |
tagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctct |
100 |
Q |
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| T |
3094193 |
tagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctct |
3094094 |
T |
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| Q |
101 |
tgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattgg |
184 |
Q |
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| T |
3094093 |
tgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattgg |
3094010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 3085347 - 3085164
Alignment:
| Q |
1 |
tagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctct |
100 |
Q |
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|||||| ||| ||||| ||||| ||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| |
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| T |
3085347 |
tagaaaatgatatgttattgtatctaaatggagcaaaagcatttgaatctattattttctcaattgtgcccatgccttgtatgcatcgttccaagtctct |
3085248 |
T |
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| Q |
101 |
tgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattgg |
184 |
Q |
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| T |
3085247 |
tgggtcctggaagtagttaaatgttaccaaagggttatcatttggatcagtgtttcggagctccaaatgacctgttgaaattgg |
3085164 |
T |
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