View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1202_high_41 (Length: 286)
Name: NF1202_high_41
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_41 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 70 - 286
Target Start/End: Complemental strand, 35373275 - 35373059
Alignment:
| Q |
70 |
agcagagagattaagtaacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcacatgggaccatggagaaaacataaa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35373275 |
agcagagagattaagtaacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcacatgggaccatggagaaaacataaa |
35373176 |
T |
|
| Q |
170 |
tacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagc |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35373175 |
tacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagc |
35373076 |
T |
|
| Q |
270 |
caaaggcatcaatgtta |
286 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35373075 |
caaaggcatcaatgtta |
35373059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 70 - 286
Target Start/End: Complemental strand, 35365159 - 35364943
Alignment:
| Q |
70 |
agcagagagattaagtaacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcacatgggaccatggagaaaacataaa |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35365159 |
agcagagagattaagtaacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcatatgggaccatggagaaaacataaa |
35365060 |
T |
|
| Q |
170 |
tacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagc |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35365059 |
tacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagc |
35364960 |
T |
|
| Q |
270 |
caaaggcatcaatgtta |
286 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35364959 |
caaaggcatcaatgtta |
35364943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 3776214 - 3776336
Alignment:
| Q |
126 |
tgaaggaaaacaaaatgcacatgggaccatggagaaaacataaatacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcact |
225 |
Q |
| |
|
||||||| || |||||||||||||| |||||||| || |||| |||||||||||||||||||||||||||| | |||||||||||||||||| | | || |
|
|
| T |
3776214 |
tgaaggataaaaaaatgcacatggggccatggaggaagcataggtacatgcaagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctct |
3776313 |
T |
|
| Q |
226 |
ttcattgggatattctgagagga |
248 |
Q |
| |
|
| || ||||| |||||||||||| |
|
|
| T |
3776314 |
tccaatgggaaattctgagagga |
3776336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 3807935 - 3808013
Alignment:
| Q |
141 |
tgcacatgggaccatggagaaaacataaatacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaa |
219 |
Q |
| |
|
|||| ||||| |||||||| | ||||| |||||| ||||||||||||||||||||| | ||||| || |||||||||| |
|
|
| T |
3807935 |
tgcatatggggccatggaggaggcataagtacatggaagctaaatggttaggtccatgtgaaaggtacccttcaacaaa |
3808013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University