View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_high_47 (Length: 270)
Name: NF1202_high_47
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 15166277 - 15166518
Alignment:
| Q |
1 |
caattgccaaacataacttgtttgaacaagatactcaattgcccaagatacttaaaattaaagcacggtgctatctttttgtattgtatacgtgttttgt |
100 |
Q |
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| T |
15166277 |
caattgccaaacataacttgtttgaacaagatactcaattgcccaagatacttaaaattaaagcacggtgctatctttttgtattgtatacgtgttttgt |
15166376 |
T |
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| Q |
101 |
aagttggcaattttggtattgctccattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagatag |
200 |
Q |
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| T |
15166377 |
aagttggcaattttggtattgctctattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagatag |
15166476 |
T |
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| Q |
201 |
cataataacaaagactcccctttattcaaatagtaaacaaat |
242 |
Q |
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| T |
15166477 |
cataataacaatgacttccctatattcaaatagtaaacaaat |
15166518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15079971 - 15079730
Alignment:
| Q |
1 |
caattgccaaacataacttgtttgaacaagatactcaattgcccaagatacttaaaattaaagcacggtgctatctttttgtattgtatacgtgttttgt |
100 |
Q |
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| T |
15079971 |
caattgtcaaacataacttgtttgaacaagatactcaattgcccaagatacttaaaattaaagcacggtgctatctttttgtattgtatacgtgttttgt |
15079872 |
T |
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| Q |
101 |
aagttggcaattttggtattgctccattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagatag |
200 |
Q |
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| T |
15079871 |
aagttggcaattttggtattgctctattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagatag |
15079772 |
T |
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| Q |
201 |
cataataacaaagactcccctttattcaaatagtaaacaaat |
242 |
Q |
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| T |
15079771 |
catgataacaatgacttccctatattgaaatagtaaacaaat |
15079730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 15158908 - 15159057
Alignment:
| Q |
56 |
aattaaagcacggtgctatctttttgtattgtatacgtgttttgtaagttggcaattttggtattgctccattggatgtataaccaaagctatgttttgg |
155 |
Q |
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| T |
15158908 |
aattaaagcacggtgctctcttttt-tattctatacgtgttttgtaatttggcaattttggtatttctccattggatgtataaccaaagccatgttttgg |
15159006 |
T |
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| Q |
156 |
agggtgctgcagtggtcttcgtattgagtgaaatct-tgaagatagcataa |
205 |
Q |
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| T |
15159007 |
agggtgctgcagtggtcttcgtattgagtgagatctctgaggatagcataa |
15159057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 15158828 - 15158864
Alignment:
| Q |
13 |
ataacttgtttgaacaagatactcaattgcccaagat |
49 |
Q |
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| T |
15158828 |
ataacttgtttgaacaaaatactcaattgcccaagat |
15158864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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