View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_high_56 (Length: 211)
Name: NF1202_high_56
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_high_56 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 33019356 - 33019548
Alignment:
| Q |
19 |
cctctccctccccttttatcctcttcctttttcatcactcatggaggaaacaatcgtaacaaagacgcatcaactcactcttacctccaccggaacccta |
118 |
Q |
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| T |
33019356 |
cctctccctccccttttatcctcttcctttttcatcactcatggaggaaacaatcgtaacaaagacgcatcaactcactcttaccttcaccggaacccta |
33019455 |
T |
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| Q |
119 |
acaacaacaactccgccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcga |
211 |
Q |
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| T |
33019456 |
acaacaacaactccgccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatccttattcaacttcga |
33019548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 33025815 - 33025946
Alignment:
| Q |
80 |
aagacgcatcaactcactcttacctccaccggaaccctaacaacaacaactccgccactacccactcttccattcgatctcatcgctgaaattctatgca |
179 |
Q |
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| T |
33025815 |
aagacgcatcaactcactcttacctccaccggaaccctaactacaaccgctcatccactacctactcttccattcgatctcatcgctgaaattctatgca |
33025914 |
T |
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| Q |
180 |
gactcccggtaaaaatcctcattcaacttcga |
211 |
Q |
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| T |
33025915 |
gactcccggtaaaactcctcattcaacttcga |
33025946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 33037364 - 33037442
Alignment:
| Q |
133 |
gccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcga |
211 |
Q |
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| T |
33037364 |
gccactacccactcttccgtttgatctcgtcgctgaaattctatgcagacttccggtaaaactcctcattcaacttcga |
33037442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 209
Target Start/End: Original strand, 33023377 - 33023527
Alignment:
| Q |
52 |
atcactcatggaggaaacaatcgtaacaaagacgcatcaactcactcttacctccaccggaaccctaacaacaacaactccgccactacccactcttcca |
151 |
Q |
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| T |
33023377 |
atcactcatggaggaaacaatcacaacaaagatacaacaattcattcttacc-------gaactctaacaacatccgctccgccactaacaactcttcca |
33023469 |
T |
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| Q |
152 |
ttcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttc |
209 |
Q |
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| T |
33023470 |
tttgatctccttgctgaaatcctttgtagaatccctgtgaaactcctccttcaacttc |
33023527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 27754828 - 27754886
Alignment:
| Q |
106 |
caccggaaccctaacaacaacaactccgccactacccactcttccattcgatctcatcg |
164 |
Q |
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| T |
27754828 |
caccgaaaccctaacatcatctcctccgccacttcccactcttacattcgatctcatcg |
27754886 |
T |
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