View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1202_high_6 (Length: 735)

Name: NF1202_high_6
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1202_high_6
NF1202_high_6
[»] chr4 (5 HSPs)
chr4 (319-735)||(35364548-35364967)
chr4 (93-206)||(35363993-35364106)
chr4 (424-500)||(24060584-24060660)
chr4 (399-506)||(42504212-42504326)
chr4 (424-477)||(30220709-30220761)
[»] scaffold0018 (1 HSPs)
scaffold0018 (424-501)||(69948-70025)
[»] chr1 (4 HSPs)
chr1 (394-477)||(1062807-1062889)
chr1 (394-476)||(13085089-13085170)
chr1 (421-506)||(35413031-35413116)
chr1 (424-477)||(43537192-43537245)
[»] chr6 (2 HSPs)
chr6 (421-506)||(32871771-32871856)
chr6 (421-506)||(6784720-6784805)
[»] chr3 (2 HSPs)
chr3 (424-506)||(2671911-2671993)
chr3 (403-477)||(26442937-26443010)
[»] chr8 (1 HSPs)
chr8 (394-459)||(26415531-26415595)
[»] chr2 (4 HSPs)
chr2 (399-500)||(14131140-14131240)
chr2 (421-506)||(37714428-37714513)
chr2 (424-500)||(27407430-27407506)
chr2 (421-459)||(24183976-24184014)
[»] chr7 (4 HSPs)
chr7 (399-459)||(46413811-46413870)
chr7 (421-459)||(15127639-15127677)
chr7 (424-506)||(22631488-22631570)
chr7 (427-500)||(21882793-21882866)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 319 - 735
Target Start/End: Original strand, 35364548 - 35364967
Alignment:
Q  319 tctatgaattgttataaattatttttaaacactcgtgaaatcctattcgatttacatctttttcactnnnnnnnngagcgttgctatttatctagagagt 418  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||| |||||        ||||||||||||||||  |||||||    
T  35364548 tctatgaattgctataaattatttttaaacactcgtgaaaccttattcgatttacatatttctcactaaaaaaaagagcgttgctatttattcagagagt 35364647  T
Q  419 ttt--ttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgttgaataattat 516  Q
    |||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364648 tttttttatcaaaaaaaggtttgacccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgttgaataattat 35364747  T
Q  517 aaaatcaggatattttcgtgatacttttcttgctagatctatcaattcccaaaaaataaagaaaaaaccaattaactaagtttccacctttctttc-nnn 615  Q
    |  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  35364748 actatcgggatattttcgtgatacttttcttgctagatctatcaattcccaaaaaataaagaaaaaaccaattaactaagtttccacctttctttcagaa 35364847  T
Q  616 nnnnnnnctaagtatccaccttgaccaataatagcaatttacacaactttaacagtagtatgcatattaggaatattctctaataaatcaatggttaaca 715  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35364848 aaaaaaactaagtatccaccttgaccaataatagcaatttacacaactttaacagtagtatgcatattcggaatattctctaataaatcaatggttaaca 35364947  T
Q  716 ttgatgcctttggcttctgc 735  Q
    ||||||||||||||||||||    
T  35364948 ttgatgcctttggcttctgc 35364967  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 35363993 - 35364106
Alignment:
Q  93 tggtcggtgggtggcaaagggggcagcgttgtggttcttcctcatgtcattctagctatccagatg-nnnnnnnngtgtgtgtttctctcttttgtagag 191  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||         |||||||||||||||||||| ||||    
T  35363993 tggtcggtgggtggcaaagggggcaccgttgcggttcttcctcatgtca-tctagctatccagatgtttttttttgtgtgtgtttctctcttttgcagag 35364091  T
Q  192 tgaagtagctgctaa 206  Q
     ||||||||||||||    
T  35364092 ggaagtagctgctaa 35364106  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 500
Target Start/End: Original strand, 24060584 - 24060660
Alignment:
Q  424 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaa 500  Q
    |||||||||| || | ||| |||||||||||||||||  | |||||||||||||| ||| | || ||||||||||||    
T  24060584 atcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgtgtaattaaggaaa 24060660  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 506
Target Start/End: Complemental strand, 42504326 - 42504212
Alignment:
Q  399 ttgctatttatctagagagtttttt-------atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataa 491  Q
    ||||||||||||||||||||||||        ||||||||||| ||| | ||||||||||||||||||  | ||||||||||||||  |||   || |||    
T  42504326 ttgctatttatctagagagtttttatgaattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaa 42504227  T
Q  492 ttaaggaaagatgtt 506  Q
    |||||||||| ||||    
T  42504226 ttaaggaaaggtgtt 42504212  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 30220709 - 30220761
Alignment:
Q  424 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 477  Q
    ||||||||||||||| | |||||||| |||||||||| | ||||||||||||||    
T  30220709 atcaagaaaaggtttca-ccaattaattttgttattggccggaaatcaagggag 30220761  T

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Target: scaffold0018 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 424 - 501
Target Start/End: Complemental strand, 70025 - 69948
Alignment:
Q  424 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaag 501  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||| | || |||||||||||||    
T  70025 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaattaaggaaag 69948  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 394 - 477
Target Start/End: Original strand, 1062807 - 1062889
Alignment:
Q  394 gagcgttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 477  Q
    |||||||| |||||||||||| | |||| ||||||||||| |||| ||||||||||||||||||||| | | |||||| |||||    
T  1062807 gagcgttgttatttatctagaaaatttt-tatcaagaaaatgtttcagccaattaaatttgttattggccgaaaatcatgggag 1062889  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 476
Target Start/End: Complemental strand, 13085170 - 13085089
Alignment:
Q  394 gagcgttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaaggga 476  Q
    |||| ||| |||||||||||||||||||| ||||||||||  | | || |||||||||||||||||  | |||||||||||||    
T  13085170 gagcattgttatttatctagagagttttt-atcaagaaaatatctcagtcaattaaatttgttatttgccggaaatcaaggga 13085089  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 35413031 - 35413116
Alignment:
Q  421 tttatcaagaaaaggtttgagccaattaaatttgtta-ttgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 506  Q
    |||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||||  ||| | || ||||||||||||| ||||    
T  35413031 tttatcaagaaaaggtctcaaccaattaaatttgttatttgac-ggaaatcaagggaggtaatagtgtgtaattaaggaaaggtgtt 35413116  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 43537245 - 43537192
Alignment:
Q  424 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 477  Q
    ||||||||||||| | ||||||||||||||||||||  | ||||||||||||||    
T  43537245 atcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggag 43537192  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 32871856 - 32871771
Alignment:
Q  421 tttatcaagaaaaggtttgagccaattaaatttgtta-ttgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 506  Q
    |||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||  ||| | || |||||||||||| |||||    
T  32871856 tttatcaagaaaaggtttcaaccaattaaatttgttatttgac-ggaaatcaagggaggtaatagtgtgtaattaaggaaaaatgtt 32871771  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 6784805 - 6784720
Alignment:
Q  421 tttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 506  Q
    |||||||| ||||| | | ||||||||||||||||||||    ||||||||||||||| ||| | || |||||||| |||| ||||    
T  6784805 tttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgtgtaattaagaaaaggtgtt 6784720  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 506
Target Start/End: Original strand, 2671911 - 2671993
Alignment:
Q  424 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 506  Q
    ||||||||||||| | ||||||||||||||||||||| ||| ||||||  ||||| |||   || ||||||||||||||||||    
T  2671911 atcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaagatgtt 2671993  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 477
Target Start/End: Original strand, 26442937 - 26443010
Alignment:
Q  403 tatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 477  Q
    |||||||||| ||| ||||||||||||||||||| | | ||||||||||||||||||    ||||||||||||||    
T  26442937 tatttatctaaaga-ttttttatcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggag 26443010  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 459
Target Start/End: Original strand, 26415531 - 26415595
Alignment:
Q  394 gagcgttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttatt 459  Q
    |||| ||||||||||||||||||| |||||||||||||||||| | | |||||||||||| |||||    
T  26415531 gagcattgctatttatctagagag-tttttatcaagaaaaggtctcaaccaattaaatttattatt 26415595  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 500
Target Start/End: Original strand, 14131140 - 14131240
Alignment:
Q  399 ttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaagga 498  Q
    ||||||||||||||||||| ||||||||||||||| || ||  |||||||||| |||||||    |||||||||| |||| ||| | || ||||||||||    
T  14131140 ttgctatttatctagagag-tttttatcaagaaaatgtctggaccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaagga 14131238  T
Q  499 aa 500  Q
    ||    
T  14131239 aa 14131240  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 37714428 - 37714513
Alignment:
Q  421 tttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 506  Q
    |||||||||||||||| | | ||||||||||||||||||   |||||||||| ||||| ||| | || ||||||||||||| ||||    
T  37714428 tttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgtaattaaggaaaggtgtt 37714513  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 500
Target Start/End: Original strand, 27407430 - 27407506
Alignment:
Q  424 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaa 500  Q
    ||||||||||| | | |||||||||||||||||||| || ||||||||||| ||| |||   || ||||||||||||    
T  27407430 atcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaa 27407506  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 421 - 459
Target Start/End: Original strand, 24183976 - 24184014
Alignment:
Q  421 tttatcaagaaaaggtttgagccaattaaatttgttatt 459  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  24183976 tttatcaagaaaaggtttcagccaattaaatttattatt 24184014  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 459
Target Start/End: Complemental strand, 46413870 - 46413811
Alignment:
Q  399 ttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttatt 459  Q
    |||||||||||||| ||||||||| |||||||||| || | | ||||||||||||||||||    
T  46413870 ttgctatttatctatagagttttt-atcaagaaaatgtctcaaccaattaaatttgttatt 46413811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 421 - 459
Target Start/End: Complemental strand, 15127677 - 15127639
Alignment:
Q  421 tttatcaagaaaaggtttgagccaattaaatttgttatt 459  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  15127677 tttatcaagaaaaggtttcagcaaattaaatttgttatt 15127639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 506
Target Start/End: Original strand, 22631488 - 22631570
Alignment:
Q  424 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 506  Q
    ||||||||||| | | ||||||||||||||||||||    ||||||||| ||||| ||| | || ||||||||||||| ||||    
T  22631488 atcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaaggtgtt 22631570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 21882866 - 21882793
Alignment:
Q  427 aagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaa 500  Q
    |||||||| | | ||||||||||||||||||||  | ||||||||||||||  ||| | || ||||||||||||    
T  21882866 aagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaggaaa 21882793  T

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