View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1202_low_11 (Length: 674)

Name: NF1202_low_11
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1202_low_11
NF1202_low_11
[»] chr4 (7 HSPs)
chr4 (258-674)||(35364548-35364967)
chr4 (32-145)||(35363993-35364106)
chr4 (363-439)||(24060584-24060660)
chr4 (338-445)||(42504212-42504326)
chr4 (363-416)||(30220709-30220761)
chr4 (363-399)||(2765432-2765468)
chr4 (614-674)||(35373023-35373083)
[»] scaffold0018 (1 HSPs)
scaffold0018 (363-440)||(69948-70025)
[»] chr1 (6 HSPs)
chr1 (333-416)||(1062807-1062889)
chr1 (333-415)||(13085089-13085170)
chr1 (360-445)||(35413031-35413116)
chr1 (363-416)||(43537192-43537245)
chr1 (361-445)||(21540080-21540164)
chr1 (369-485)||(47996691-47996807)
[»] chr6 (2 HSPs)
chr6 (360-445)||(32871771-32871856)
chr6 (360-445)||(6784720-6784805)
[»] chr3 (2 HSPs)
chr3 (363-445)||(2671911-2671993)
chr3 (342-416)||(26442937-26443010)
[»] chr8 (1 HSPs)
chr8 (333-398)||(26415531-26415595)
[»] chr2 (5 HSPs)
chr2 (338-439)||(14131140-14131240)
chr2 (360-445)||(37714428-37714513)
chr2 (363-439)||(27407430-27407506)
chr2 (360-398)||(24183976-24184014)
chr2 (360-416)||(38320247-38320303)
[»] chr7 (4 HSPs)
chr7 (338-398)||(46413811-46413870)
chr7 (360-398)||(15127639-15127677)
chr7 (363-445)||(22631488-22631570)
chr7 (366-439)||(21882793-21882866)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 258 - 674
Target Start/End: Original strand, 35364548 - 35364967
Alignment:
Q  258 tctatgaattgttataaattatttttaaacactcgtgaaatcctattcgatttacatctttttcactnnnnnnnngagcgttgctatttatctagagagt 357  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||| |||||        ||||||||||||||||  |||||||    
T  35364548 tctatgaattgctataaattatttttaaacactcgtgaaaccttattcgatttacatatttctcactaaaaaaaagagcgttgctatttattcagagagt 35364647  T
Q  358 ttt--ttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgttgaataattat 455  Q
    |||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364648 tttttttatcaaaaaaaggtttgacccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgttgaataattat 35364747  T
Q  456 aaaatcaggatattttcgtgatacttttcttgctagatctatcaattcccaaaaaataaagaaaaaaccaattaactaagtttccacctttctttc-nnn 554  Q
    |  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  35364748 actatcgggatattttcgtgatacttttcttgctagatctatcaattcccaaaaaataaagaaaaaaccaattaactaagtttccacctttctttcagaa 35364847  T
Q  555 nnnnnnnctaagtatccaccttgaccaataatagcaatttacacaactttaacagtagtatgcatattaggaatattctctaataaatcaatggttaaca 654  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35364848 aaaaaaactaagtatccaccttgaccaataatagcaatttacacaactttaacagtagtatgcatattcggaatattctctaataaatcaatggttaaca 35364947  T
Q  655 ttgatgcctttggcttctgc 674  Q
    ||||||||||||||||||||    
T  35364948 ttgatgcctttggcttctgc 35364967  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 35363993 - 35364106
Alignment:
Q  32 tggtcggtgggtggcaaagggggcagcgttgtggttcttcctcatgtcattctagctatccagatg-nnnnnnnngtgtgtgtttctctcttttgtagag 130  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||         |||||||||||||||||||| ||||    
T  35363993 tggtcggtgggtggcaaagggggcaccgttgcggttcttcctcatgtca-tctagctatccagatgtttttttttgtgtgtgtttctctcttttgcagag 35364091  T
Q  131 tgaagtagctgctaa 145  Q
     ||||||||||||||    
T  35364092 ggaagtagctgctaa 35364106  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 439
Target Start/End: Original strand, 24060584 - 24060660
Alignment:
Q  363 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaa 439  Q
    |||||||||| || | ||| |||||||||||||||||  | |||||||||||||| ||| | || ||||||||||||    
T  24060584 atcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgtgtaattaaggaaa 24060660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 445
Target Start/End: Complemental strand, 42504326 - 42504212
Alignment:
Q  338 ttgctatttatctagagagtttttt-------atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataa 430  Q
    ||||||||||||||||||||||||        ||||||||||| ||| | ||||||||||||||||||  | ||||||||||||||  |||   || |||    
T  42504326 ttgctatttatctagagagtttttatgaattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaa 42504227  T
Q  431 ttaaggaaagatgtt 445  Q
    |||||||||| ||||    
T  42504226 ttaaggaaaggtgtt 42504212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 30220709 - 30220761
Alignment:
Q  363 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 416  Q
    ||||||||||||||| | |||||||| |||||||||| | ||||||||||||||    
T  30220709 atcaagaaaaggtttca-ccaattaattttgttattggccggaaatcaagggag 30220761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 2765468 - 2765432
Alignment:
Q  363 atcaagaaaaggtttgagccaattaaatttgttattg 399  Q
    ||||||||||||| | |||||||||||||||||||||    
T  2765468 atcaagaaaaggtctaagccaattaaatttgttattg 2765432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 614 - 674
Target Start/End: Original strand, 35373023 - 35373083
Alignment:
Q  614 atgcatattaggaatattctctaataaatcaatggttaacattgatgcctttggcttctgc 674  Q
    |||||||| |||||  |||||||  ||||| |  |||||||||||||||||||||||||||    
T  35373023 atgcatatcaggaaacttctctagcaaatccactgttaacattgatgcctttggcttctgc 35373083  T

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Target: scaffold0018 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 70025 - 69948
Alignment:
Q  363 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaag 440  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||| | || |||||||||||||    
T  70025 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaattaaggaaag 69948  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 333 - 416
Target Start/End: Original strand, 1062807 - 1062889
Alignment:
Q  333 gagcgttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 416  Q
    |||||||| |||||||||||| | |||| ||||||||||| |||| ||||||||||||||||||||| | | |||||| |||||    
T  1062807 gagcgttgttatttatctagaaaatttt-tatcaagaaaatgtttcagccaattaaatttgttattggccgaaaatcatgggag 1062889  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 415
Target Start/End: Complemental strand, 13085170 - 13085089
Alignment:
Q  333 gagcgttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaaggga 415  Q
    |||| ||| |||||||||||||||||||| ||||||||||  | | || |||||||||||||||||  | |||||||||||||    
T  13085170 gagcattgttatttatctagagagttttt-atcaagaaaatatctcagtcaattaaatttgttatttgccggaaatcaaggga 13085089  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 445
Target Start/End: Original strand, 35413031 - 35413116
Alignment:
Q  360 tttatcaagaaaaggtttgagccaattaaatttgtta-ttgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 445  Q
    |||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||||  ||| | || ||||||||||||| ||||    
T  35413031 tttatcaagaaaaggtctcaaccaattaaatttgttatttgac-ggaaatcaagggaggtaatagtgtgtaattaaggaaaggtgtt 35413116  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 43537245 - 43537192
Alignment:
Q  363 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 416  Q
    ||||||||||||| | ||||||||||||||||||||  | ||||||||||||||    
T  43537245 atcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggag 43537192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 445
Target Start/End: Original strand, 21540080 - 21540164
Alignment:
Q  361 ttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 445  Q
    |||||||||||| || | ||||||||||||||||||||    |||||| |||||||| |||  ||| ||||||| ||||| ||||    
T  21540080 ttatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataatgaagtgtaattaaagaaaggtgtt 21540164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 485
Target Start/End: Original strand, 47996691 - 47996807
Alignment:
Q  369 aaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgttgaataattataaaatcaggatat 468  Q
    |||| |||| || ||||||||||| |||||| |||||||| |||||||  |||  | | |||||||| |||| ||||||  |||||||   ||  || ||    
T  47996691 aaaatgtttcagtcaattaaatttcttattggctggaaattaagggaggtaatcaaatgtaattaagaaaaggtgttgagcaattatactctcgagaaat 47996790  T
Q  469 tttcgtgatacttttct 485  Q
    |||||||||||||||||    
T  47996791 tttcgtgatacttttct 47996807  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 360 - 445
Target Start/End: Complemental strand, 32871856 - 32871771
Alignment:
Q  360 tttatcaagaaaaggtttgagccaattaaatttgtta-ttgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 445  Q
    |||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||  ||| | || |||||||||||| |||||    
T  32871856 tttatcaagaaaaggtttcaaccaattaaatttgttatttgac-ggaaatcaagggaggtaatagtgtgtaattaaggaaaaatgtt 32871771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 445
Target Start/End: Complemental strand, 6784805 - 6784720
Alignment:
Q  360 tttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 445  Q
    |||||||| ||||| | | ||||||||||||||||||||    ||||||||||||||| ||| | || |||||||| |||| ||||    
T  6784805 tttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgtgtaattaagaaaaggtgtt 6784720  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 445
Target Start/End: Original strand, 2671911 - 2671993
Alignment:
Q  363 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 445  Q
    ||||||||||||| | ||||||||||||||||||||| ||| ||||||  ||||| |||   || ||||||||||||||||||    
T  2671911 atcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaagatgtt 2671993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 416
Target Start/End: Original strand, 26442937 - 26443010
Alignment:
Q  342 tatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 416  Q
    |||||||||| ||| ||||||||||||||||||| | | ||||||||||||||||||    ||||||||||||||    
T  26442937 tatttatctaaaga-ttttttatcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggag 26443010  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 26415531 - 26415595
Alignment:
Q  333 gagcgttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttatt 398  Q
    |||| ||||||||||||||||||| |||||||||||||||||| | | |||||||||||| |||||    
T  26415531 gagcattgctatttatctagagag-tttttatcaagaaaaggtctcaaccaattaaatttattatt 26415595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 338 - 439
Target Start/End: Original strand, 14131140 - 14131240
Alignment:
Q  338 ttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaagga 437  Q
    ||||||||||||||||||| ||||||||||||||| || ||  |||||||||| |||||||    |||||||||| |||| ||| | || ||||||||||    
T  14131140 ttgctatttatctagagag-tttttatcaagaaaatgtctggaccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaagga 14131238  T
Q  438 aa 439  Q
    ||    
T  14131239 aa 14131240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 445
Target Start/End: Original strand, 37714428 - 37714513
Alignment:
Q  360 tttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 445  Q
    |||||||||||||||| | | ||||||||||||||||||   |||||||||| ||||| ||| | || ||||||||||||| ||||    
T  37714428 tttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgtaattaaggaaaggtgtt 37714513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 439
Target Start/End: Original strand, 27407430 - 27407506
Alignment:
Q  363 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaa 439  Q
    ||||||||||| | | |||||||||||||||||||| || ||||||||||| ||| |||   || ||||||||||||    
T  27407430 atcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaa 27407506  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 24183976 - 24184014
Alignment:
Q  360 tttatcaagaaaaggtttgagccaattaaatttgttatt 398  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  24183976 tttatcaagaaaaggtttcagccaattaaatttattatt 24184014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 38320303 - 38320247
Alignment:
Q  360 tttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 416  Q
    |||||||||||||| ||| | ||||||||||||||||||   |||||||||| ||||    
T  38320303 tttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggag 38320247  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 46413870 - 46413811
Alignment:
Q  338 ttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttatt 398  Q
    |||||||||||||| ||||||||| |||||||||| || | | ||||||||||||||||||    
T  46413870 ttgctatttatctatagagttttt-atcaagaaaatgtctcaaccaattaaatttgttatt 46413811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 15127677 - 15127639
Alignment:
Q  360 tttatcaagaaaaggtttgagccaattaaatttgttatt 398  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  15127677 tttatcaagaaaaggtttcagcaaattaaatttgttatt 15127639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 445
Target Start/End: Original strand, 22631488 - 22631570
Alignment:
Q  363 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 445  Q
    ||||||||||| | | ||||||||||||||||||||    ||||||||| ||||| ||| | || ||||||||||||| ||||    
T  22631488 atcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaaggtgtt 22631570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 21882866 - 21882793
Alignment:
Q  366 aagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaa 439  Q
    |||||||| | | ||||||||||||||||||||  | ||||||||||||||  ||| | || ||||||||||||    
T  21882866 aagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaggaaa 21882793  T

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