View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_13 (Length: 564)
Name: NF1202_low_13
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 95 - 552
Target Start/End: Original strand, 27571038 - 27571494
Alignment:
| Q |
95 |
gatttacaaattgcagatatatcagataatagttggctgatgtatattgtgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccag |
194 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27571038 |
gatttacaaattgaagatatatcagataatagttggctgatgtatattgtgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccag |
27571137 |
T |
|
| Q |
195 |
tggatcaactataccaaaatgcattaacaaacatcaggtctttttcaccaatgcattgttttaccatgtctgttggccattatctcagaaggtagagtat |
294 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27571138 |
tggatcaactat-ccaaaatgcattaacaaacatcaggtctttttcaccaatgcattgttttaccatgtctgttggccattatctcagaaggtagagtat |
27571236 |
T |
|
| Q |
295 |
ttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattacaatcc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27571237 |
ttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattacaatcc |
27571336 |
T |
|
| Q |
395 |
atcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaaagcaacacaaatcttttccatt |
494 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27571337 |
atcaaaatacattcattggttaattggtttgtttgagacccttagcaactatatatacactattccttgagttctcaaagcaacacaaatcttttccatt |
27571436 |
T |
|
| Q |
495 |
ctgagttataaaaactcaaatatttctttctcatccaatcctctgccatcatcagtat |
552 |
Q |
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| T |
27571437 |
ctgagttataaaaactcaaatatttctttctcatccaatcctctgccatcatcagtat |
27571494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 265 - 552
Target Start/End: Complemental strand, 27419621 - 27419338
Alignment:
| Q |
265 |
tgttggccattatctcagaaggtagagtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacc |
364 |
Q |
| |
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||||||||||||||||| || || | |||| |||||| |||| ||| |||||| |||||||||||||| | | |||| ||||||||||||||| || |
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| T |
27419621 |
tgttggccattatctcacaatgtggggtatgtgcatgctcttccattaagcttc--ctaatccttgaaaaa-atatgtataggacaataccatgtgatcc |
27419525 |
T |
|
| Q |
365 |
cttgtacctaactagactctattacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttga |
464 |
Q |
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| T |
27419524 |
cttgtccttcacttgaccctatcacagctcaccaaattacattcactgattaattggtttgtag-aggcccttagaaactatatatacattattccttgg |
27419426 |
T |
|
| Q |
465 |
gttctcaaagcaacacaaatcttttccattctgagttataaaaactcaaatatttctttctcatccaatcctctgccatcatcagtat |
552 |
Q |
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|||||||| ||||| ||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27419425 |
attctcaaatcaacataaatcttttgcattctgaattataagaattcaaatatttctttctcatccaatcctctgccatcatcagtat |
27419338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 291 - 532
Target Start/End: Complemental strand, 27422448 - 27422210
Alignment:
| Q |
291 |
gtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattaca |
390 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| ||||| | |||| ||| |
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| T |
27422448 |
gtatttgcatgttcttccatttaacttcatctaatccttgaaaatgacttctataagacaataccatgtgatctcttgtccctcactaggccctatcaca |
27422349 |
T |
|
| Q |
391 |
atccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaaagcaacacaaatcttttc |
490 |
Q |
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||||||||||| |||||||| ||||||||||| | || |||||||||||||| ||||||||| || ||| | |||| ||| ||||||| |||||| |
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| T |
27422348 |
gctcatcaaaatactttcattggctaattggtttg-tagagtcccttagcaactatttatacactactctttg-ggtctc-aagtaacacaagtcttttg |
27422252 |
T |
|
| Q |
491 |
cattctgagttataaaaactcaaatatttctttctcatccaa |
532 |
Q |
| |
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||| | | |||| | || ||||||||||||||||||||||| |
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| T |
27422251 |
catcataaattatcagaattcaaatatttctttctcatccaa |
27422210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 286 - 532
Target Start/End: Complemental strand, 27414809 - 27414562
Alignment:
| Q |
286 |
gtagagtatttgcatgttcttatatttagcttcatctaatcctt-gaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactct |
384 |
Q |
| |
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|||| |||| ||||||||||| ||||||||||||||||| || ||||||||| |||||| ||||||||||||||| ||||||| ||| ||||| | || |
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| T |
27414809 |
gtagggtatgtgcatgttcttccatttagcttcatctaatagtttgaaaatgacttctataggacaataccatgtgatcccttgtccctcactaggccct |
27414710 |
T |
|
| Q |
385 |
attacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatataca-ctattccttgagttctcaaagcaacacaaa |
483 |
Q |
| |
|
|| ||| ||||||||| | | |||||| | |||| ||| | || ||||| ||||||||||||||| |||||| ||| |||||| ||||||||||| |
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| T |
27414709 |
atcacagctcatcaaaatgcttccattggctgattgattttgtagagtcccttggcaactatatatacacctattcattgtgttctc-aagcaacacaag |
27414611 |
T |
|
| Q |
484 |
tcttttccattctgagttataaaaactcaaatatttctttctcatccaa |
532 |
Q |
| |
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|||||| ||| || | |||| | || ||||||| |||||||||||||| |
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| T |
27414610 |
tcttttgcatcctaaattatcataattcaaataaatctttctcatccaa |
27414562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 291 - 552
Target Start/End: Original strand, 27566870 - 27567131
Alignment:
| Q |
291 |
gtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattaca |
390 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||| |||||||||||| || || | ||||| |||||||| |||| || ||| | ||| | |||| ||| |
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| T |
27566870 |
gtatgtgcatgttcttccatttatcttcatctaatgcttgaaaatgacttccatgatacaatgccatgtgatccctggtccctcagtaggccctatcaca |
27566969 |
T |
|
| Q |
391 |
atccatcaaaatacattcattggttaattggtttgtttcagacccttagcaac--tatatatacactattccttgagttctcaaagcaacacaaatcttt |
488 |
Q |
| |
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||||| || || |||||||| ||| ||||||| | ||| ||||||||||| |||||||||| ||||| || ||||||| || || ||||| ||||| |
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| T |
27566970 |
gctcatcacaacactttcattggctaagtggtttg-tacaggcccttagcaactatatatatacattattcttttagttctc-aatcaccacaagtcttt |
27567067 |
T |
|
| Q |
489 |
tccattctgagttataaaaactcaaatatttctttctcatccaatcctctgccatcatcagtat |
552 |
Q |
| |
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| ||| | | | || | || ||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
27567068 |
tgcatcataaatcatcagaattcaaatatttctttctcatccaatcctctaacataatcagtat |
27567131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 472
Target Start/End: Complemental strand, 27425026 - 27424835
Alignment:
| Q |
291 |
gtatttgcatgttcttatatttagcttcatcta--atccttgaaaatgacctctataagac--------aataccatgtgaacccttgtacctaactaga |
380 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||| ||||||||||||||| |||||||||| |||||||||||| ||||||| | | ||||| |
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| T |
27425026 |
gtatttgaatgttcttccatttaacttcatctataatccttgaaaatgacttctataagacaatagtacaataccatgtgatcccttgtccgtcactagg |
27424927 |
T |
|
| Q |
381 |
ctctattacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaa |
472 |
Q |
| |
|
| |||| ||| || |||||||| |||||||| |||||| ||| | || ||||||| |||||||||||||||||| || |||||||| |
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| T |
27424926 |
ccctatcacagctcaccaaaatactttcattggctaattgattttgtagagttccttagcttctatatatacactattccatgggttctcaa |
27424835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 27419754 - 27419645
Alignment:
| Q |
144 |
tgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtctttttcacc |
243 |
Q |
| |
|
|||| ||||||| ||||||||||| || |||||| || |||||||| | ||||| | ||||||| ||||||| || ||||||||||| | ||||||| |
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| T |
27419754 |
tgcaatgtcaattagaagaaacatgtgagatgtctaaagcatgtctacaattggattatctatacccaaatgcaagaaaaaacatcaggtttctttcacc |
27419655 |
T |
|
| Q |
244 |
aatgcattgt |
253 |
Q |
| |
|
| |||||||| |
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| T |
27419654 |
attgcattgt |
27419645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 27425130 - 27425068
Alignment:
| Q |
184 |
atgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtctttttcaccaat |
246 |
Q |
| |
|
|||||||||| || || | |||||||||||| || ||||||||||||||| | |||||||||| |
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|
| T |
27425130 |
atgtctaccattgcattagctataccaaaattcaataacaaacatcaggtttctttcaccaat |
27425068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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