View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_16 (Length: 554)
Name: NF1202_low_16
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 3094332 - 3094876
Alignment:
| Q |
1 |
ttgttgatagtgattataaggttgctggtgtccacgcattgcgcgtaatcgacggttctacctttaatcattctcctggaactaatcctcaagccactgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094332 |
ttgttgatagtgattataaggttgctggtgtccacgcattgcgcgtaatcgacggttctacctttaatcattctcctggaactaatcctcaagccactgt |
3094431 |
T |
|
| Q |
101 |
tatgatgcttggaaggtaaaatatacacttagtatatgcatatgaatttcatttatgtgtgacaatgtgtgtacattgttgaaattgctcctttatcttg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094432 |
tatgatgcttggaaggtaaaatatacagttagtatatgcatatgaatttcatttgtgtgtgacaatgtgtgtacattgttgaaattgctcctttatcttg |
3094531 |
T |
|
| Q |
201 |
tgttttcagatatcttatggtatttgattttttattaatttggagtgcaggtatatgggagtcaaaatattgagagagagatttgctgctgatgaaacca |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3094532 |
tgttttcagatatcttatggtacttgattttttattaatttggagtgcaggtatatgggagtcaaaatattgagagagagatttgctgatgatgaaacca |
3094631 |
T |
|
| Q |
301 |
cttaacattgtataaataaatttaacatatgatttttatctattgatgttcattaattgatgtatgatcactgagaaaatccactctagacttagattgt |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3094632 |
cttaatattgtataaataaatttaacatatgatttttatctattgatgttcattaattgatgtatggtcactgagaaaatccactctagacttagattgt |
3094731 |
T |
|
| Q |
401 |
atcaagttattattactccataatgaatatatactactgtatctttgttcatttgaatcccgaaaaatga---annnnnnnnnnnnnnnnnnatttcaat |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |
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| T |
3094732 |
atcaagttattattactccataatgaatatatactactgtatctttgttcatttgaatcccgaaaaattaatgaatttttttgttttgttttatttcaat |
3094831 |
T |
|
| Q |
498 |
tagaatggatgtaagagtacgagatttgtttggacttgggagaat |
542 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094832 |
tagaatggatgtaagagtacgagatttgtttggacttgggagaat |
3094876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 3085486 - 3085916
Alignment:
| Q |
1 |
ttgttgatagtgattataaggttgctggtgtccacgcattgcgcgtaatcgacggttctacctttaatcattctcctggaactaatcctcaagccactgt |
100 |
Q |
| |
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||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |
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|
| T |
3085486 |
ttgttgataatgattataaggttcttggtgtcgatgcattgcgcgtaatcgacggttctaccttcaactattctcctggaactaatcctcaagccactct |
3085585 |
T |
|
| Q |
101 |
tatgatgcttggaaggtaaaatatacacttagtatatgcatatgaatttcatttatgtgtgacaatgtgtgtacattgttgaaattgctcctttatcttg |
200 |
Q |
| |
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|||||||||||||||||||||||| | ||||| ||||||||| ||||| |||| ||||| ||||||||||||||||| |||||||| ||||| |||||| |
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| T |
3085586 |
catgatgcttggaaggtaaaatatatagttagtctatgcatataaatttaatttgtgtgttacaatgtgtgtacattggtgaaattgttccttaatcttg |
3085685 |
T |
|
| Q |
201 |
tgttttcagatatcttatggtatttga--ttttttattaatttggagtgcaggtatatgggagtcaaaatattgagagagagatttgctgctgatgaaac |
298 |
Q |
| |
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|| ||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
3085686 |
tgatttcatatatcttatggtacttgaatttttttattaatttggtgtgcaggtatatgggagtcagaatattgagagagagacttgctgctgatgaaac |
3085785 |
T |
|
| Q |
299 |
cacttaacattgtataaataaatttaacatatgatttttatctattgatgttcattaattgatgtatgatcactgagaaaatccactctagacttagatt |
398 |
Q |
| |
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|| |||| ||||||| |||||||||| | | | ||| |||||| |||||||| | ||||||| | |||| |||||||||||||||||||| |||| |
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| T |
3085786 |
caattaatattgtattgataaatttaatttttagtatttctctattcatgttcatcatttgatgtctagccactaagaaaatccactctagacttggatt |
3085885 |
T |
|
| Q |
399 |
gtatcaagttattattactccataatgaata |
429 |
Q |
| |
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| |||||||| |||||||||| |||||||| |
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|
| T |
3085886 |
atttcaagttaatattactccacaatgaata |
3085916 |
T |
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