View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_19 (Length: 518)
Name: NF1202_low_19
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 98 - 510
Target Start/End: Complemental strand, 23932022 - 23931619
Alignment:
| Q |
98 |
aggaacatcatctcaaaatgagggaatggtgtttcttgttcatgttgaacccattttccacaattatgtgcaccctattggaccaggtggtgctggttag |
197 |
Q |
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| T |
23932022 |
aggaacatcatctgaaaatgagggaatggtgtttcttgttcatgttgaacccattttccacaattatgtgcaccctattggaccaggtggtgctggttag |
23931923 |
T |
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| Q |
198 |
tactacatcttt-actctctcctctatctcctgtgaatannnnnnnn-ggaagatagacgaaatgaccaagtgtataagtggatgagtcagaaccaagtc |
295 |
Q |
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| T |
23931922 |
tactacatcttttactttctcct-tatctcctttgagtatctttctttggaagatagacgaaatgaccacgtgcataagtggaggagtcag--------- |
23931833 |
T |
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| Q |
296 |
aaggttctgac-ctagatcatattgtccagctaagcgattttgatatttttgcgcgttgaattaagacttttggacattttcttttaatatctatcatta |
394 |
Q |
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||||||||| || ||||| ||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23931832 |
--ggttctgactctggatcacattgtccgactaagcaattttgatatttttgcgtgttgaattgagacttttggacattttcttttaatatctatcatta |
23931735 |
T |
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| Q |
395 |
tagaactattataaaactagagaagtgaaattttgagactgaacaaataaaatttatgtctaattctatcctcaatattttatcacttcaacagcttttt |
494 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23931734 |
tagaactattataaaactagagaaatgaaattttgagactgaacaaataaaatttatgtctaattctatcctcaatattttatcacttcaacagcttttt |
23931635 |
T |
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| Q |
495 |
atccagcatctgtggt |
510 |
Q |
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|||||||||||||||| |
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| T |
23931634 |
atccagcatctgtggt |
23931619 |
T |
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