View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1202_low_21 (Length: 490)

Name: NF1202_low_21
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1202_low_21
NF1202_low_21
[»] chr2 (21 HSPs)
chr2 (30-418)||(43131709-43132095)
chr2 (105-197)||(4978776-4978868)
chr2 (105-197)||(4996684-4996776)
chr2 (95-203)||(27896454-27896562)
chr2 (96-199)||(1870509-1870611)
chr2 (114-197)||(7304352-7304434)
chr2 (101-185)||(44065744-44065828)
chr2 (96-196)||(13738410-13738510)
chr2 (96-196)||(13835835-13835934)
chr2 (131-198)||(6315883-6315950)
chr2 (96-195)||(34501609-34501707)
chr2 (84-146)||(36766699-36766764)
chr2 (111-173)||(38193709-38193772)
chr2 (171-203)||(33635181-33635213)
chr2 (105-200)||(5525309-5525404)
chr2 (96-198)||(23453340-23453443)
chr2 (131-200)||(41436319-41436388)
chr2 (96-168)||(4623745-4623817)
chr2 (139-199)||(21646535-21646594)
chr2 (131-195)||(28331304-28331368)
chr2 (100-152)||(33635555-33635607)
[»] scaffold0299 (1 HSPs)
scaffold0299 (96-199)||(18031-18135)
[»] chr5 (25 HSPs)
chr5 (96-200)||(6102823-6102926)
chr5 (114-196)||(28511182-28511265)
chr5 (96-196)||(16802026-16802125)
chr5 (101-200)||(30840618-30840716)
chr5 (96-185)||(12036323-12036411)
chr5 (131-199)||(7609590-7609657)
chr5 (133-199)||(1447606-1447672)
chr5 (96-196)||(15139185-15139281)
chr5 (96-197)||(3600108-3600208)
chr5 (128-173)||(14044727-14044772)
chr5 (96-196)||(14152487-14152587)
chr5 (131-196)||(22293982-22294047)
chr5 (129-197)||(14863334-14863401)
chr5 (108-199)||(39034478-39034569)
chr5 (111-162)||(2835650-2835701)
chr5 (142-200)||(6830262-6830320)
chr5 (99-198)||(7224035-7224133)
chr5 (129-199)||(2611197-2611266)
chr5 (129-227)||(11320094-11320190)
chr5 (129-202)||(8435049-8435122)
chr5 (96-181)||(11815924-11816009)
chr5 (129-197)||(21052676-21052743)
chr5 (131-199)||(27544584-27544652)
chr5 (96-152)||(30293838-30293894)
chr5 (101-153)||(35290678-35290730)
[»] chr4 (30 HSPs)
chr4 (96-199)||(34236175-34236278)
chr4 (121-199)||(48202480-48202558)
chr4 (96-200)||(16831116-16831219)
chr4 (100-196)||(55090779-55090874)
chr4 (96-198)||(53142777-53142879)
chr4 (96-197)||(20775069-20775170)
chr4 (111-196)||(44740877-44740963)
chr4 (96-197)||(51100041-51100143)
chr4 (128-199)||(27284067-27284138)
chr4 (128-180)||(2565458-2565510)
chr4 (96-196)||(50101295-50101395)
chr4 (128-199)||(2824863-2824934)
chr4 (96-199)||(2908226-2908328)
chr4 (128-191)||(12094961-12095024)
chr4 (128-199)||(52837314-52837385)
chr4 (96-181)||(5645662-5645747)
chr4 (96-193)||(9119242-9119339)
chr4 (128-181)||(19480550-19480603)
chr4 (97-166)||(32325053-32325121)
chr4 (94-199)||(41142307-41142412)
chr4 (101-185)||(19248898-19248981)
chr4 (129-201)||(31647715-31647786)
chr4 (96-175)||(4860137-4860215)
chr4 (158-197)||(18744893-18744932)
chr4 (143-197)||(35808568-35808621)
chr4 (100-169)||(14347141-14347209)
chr4 (131-196)||(30694284-30694349)
chr4 (96-153)||(45921354-45921411)
chr4 (96-196)||(12076443-12076543)
chr4 (144-196)||(48524493-48524545)
[»] chr1 (25 HSPs)
chr1 (96-180)||(27513-27596)
chr1 (105-199)||(33148155-33148249)
chr1 (87-181)||(39238844-39238938)
chr1 (96-197)||(34382648-34382748)
chr1 (96-176)||(35876767-35876847)
chr1 (105-197)||(49731186-49731278)
chr1 (84-150)||(35873495-35873561)
chr1 (96-181)||(11449073-11449158)
chr1 (128-196)||(13969146-13969214)
chr1 (131-201)||(31884510-31884579)
chr1 (64-191)||(33148902-33149027)
chr1 (129-199)||(38597475-38597545)
chr1 (96-169)||(31160752-31160824)
chr1 (128-196)||(26890115-26890183)
chr1 (101-169)||(28490669-28490736)
chr1 (129-201)||(40391266-40391337)
chr1 (128-192)||(46295918-46295982)
chr1 (166-233)||(17644838-17644905)
chr1 (139-198)||(36160564-36160623)
chr1 (166-199)||(5069698-5069731)
chr1 (130-199)||(27742549-27742617)
chr1 (164-201)||(48887787-48887824)
chr1 (131-184)||(50127398-50127451)
chr1 (158-198)||(30109222-30109262)
chr1 (128-196)||(33337426-33337494)
[»] chr8 (24 HSPs)
chr8 (96-198)||(18131188-18131289)
chr8 (123-200)||(30924208-30924284)
chr8 (96-197)||(3137397-3137498)
chr8 (96-196)||(32881111-32881211)
chr8 (96-199)||(33621367-33621464)
chr8 (96-199)||(10451893-10451997)
chr8 (96-169)||(40607324-40607396)
chr8 (96-200)||(34678222-34678325)
chr8 (128-196)||(43917585-43917653)
chr8 (133-197)||(44655286-44655350)
chr8 (96-175)||(4989715-4989793)
chr8 (259-326)||(18117406-18117473)
chr8 (128-197)||(10029159-10029228)
chr8 (96-192)||(18200696-18200792)
chr8 (96-196)||(35901431-35901531)
chr8 (96-199)||(11150918-11151020)
chr8 (131-181)||(6270199-6270249)
chr8 (106-176)||(20821908-20821978)
chr8 (105-202)||(37529978-37530078)
chr8 (148-197)||(27162832-27162881)
chr8 (139-199)||(900292-900351)
chr8 (105-196)||(17921710-17921802)
chr8 (128-199)||(20542382-20542453)
chr8 (129-197)||(28462592-28462658)
[»] chr6 (22 HSPs)
chr6 (128-197)||(10008190-10008259)
chr6 (128-197)||(27082308-27082377)
chr6 (105-197)||(2911491-2911583)
chr6 (96-228)||(5611144-5611276)
chr6 (96-197)||(9213059-9213160)
chr6 (96-199)||(6770828-6770932)
chr6 (128-196)||(18493241-18493309)
chr6 (96-199)||(32800199-32800303)
chr6 (96-175)||(2613367-2613448)
chr6 (96-169)||(28048756-28048828)
chr6 (139-199)||(31223190-31223251)
chr6 (132-192)||(12677822-12677882)
chr6 (128-200)||(17835023-17835095)
chr6 (132-192)||(19659665-19659725)
chr6 (156-200)||(30396454-30396498)
chr6 (165-200)||(20208193-20208228)
chr6 (165-200)||(22102216-22102251)
chr6 (96-182)||(20208028-20208113)
chr6 (96-182)||(22102051-22102136)
chr6 (96-152)||(2398050-2398106)
chr6 (129-181)||(22552241-22552292)
chr6 (132-196)||(30699823-30699887)
[»] chr7 (28 HSPs)
chr7 (87-199)||(47445362-47445474)
chr7 (96-197)||(8656291-8656393)
chr7 (105-199)||(16979937-16980031)
chr7 (131-197)||(37928297-37928363)
chr7 (96-200)||(39786467-39786571)
chr7 (100-197)||(47537423-47537519)
chr7 (131-198)||(23142702-23142770)
chr7 (96-199)||(24937827-24937929)
chr7 (107-197)||(41760365-41760455)
chr7 (114-193)||(34834696-34834773)
chr7 (96-181)||(8896613-8896698)
chr7 (131-199)||(7833794-7833862)
chr7 (105-197)||(22931882-22931974)
chr7 (84-196)||(33194720-33194832)
chr7 (105-177)||(34993152-34993224)
chr7 (129-181)||(45907082-45907134)
chr7 (100-199)||(12810166-12810265)
chr7 (101-194)||(37532574-37532668)
chr7 (96-182)||(39386917-39387003)
chr7 (132-196)||(16685729-16685794)
chr7 (132-196)||(17659965-17660030)
chr7 (128-177)||(23317845-23317894)
chr7 (96-149)||(25780245-25780298)
chr7 (132-193)||(26241656-26241717)
chr7 (128-181)||(33988492-33988545)
chr7 (105-189)||(46300678-46300762)
chr7 (96-156)||(21164669-21164729)
chr7 (150-198)||(42061222-42061270)
[»] scaffold0039 (1 HSPs)
scaffold0039 (128-200)||(30034-30106)
[»] chr3 (27 HSPs)
chr3 (112-196)||(4490779-4490862)
chr3 (105-181)||(29032425-29032501)
chr3 (131-199)||(48338808-48338876)
chr3 (96-196)||(34228273-34228372)
chr3 (132-194)||(37043037-37043099)
chr3 (96-197)||(45408684-45408784)
chr3 (96-194)||(55446733-55446830)
chr3 (96-194)||(2127368-2127461)
chr3 (107-196)||(2379631-2379719)
chr3 (131-196)||(4020096-4020161)
chr3 (129-198)||(15671165-15671233)
chr3 (96-200)||(42788343-42788448)
chr3 (97-182)||(54801346-54801431)
chr3 (96-168)||(41287898-41287969)
chr3 (129-184)||(35322019-35322074)
chr3 (133-191)||(31069612-31069670)
chr3 (131-193)||(31494055-31494117)
chr3 (129-199)||(42163655-42163724)
chr3 (129-199)||(44291278-44291347)
chr3 (128-196)||(6785841-6785910)
chr3 (131-195)||(26613115-26613180)
chr3 (117-197)||(40491240-40491320)
chr3 (131-199)||(4128743-4128811)
chr3 (97-153)||(25958075-25958131)
chr3 (128-196)||(28709613-28709681)
chr3 (132-196)||(40843060-40843124)
chr3 (131-183)||(50958871-50958923)
[»] scaffold0034 (1 HSPs)
scaffold0034 (129-201)||(22472-22543)
[»] scaffold0017 (1 HSPs)
scaffold0017 (158-196)||(31466-31504)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 43131709 - 43132095
Alignment:
Q  30 gaactatccaataagacattactgctgctagtttaagggtcttgctactagttaaaagaatccttgaataaaaaatttgtcttaaaaatgtaagtttata 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  43131709 gaactatccaataagacattactgctgctagtttaagggtcttgctactagttaaa-gaatccttgaataaaaattttgtcttaaaaatgtaagtttata 43131807  T
Q  130 cttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctcaacgatattggctaatattctccttaat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |    
T  43131808 cttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaatcaatgcctcaacgacattggttaatattctccttagt 43131907  T
Q  230 ttaaccgttgaaaataagaatatttagaatcacaacgtatttgatccacctcaatttcatgtcttgaaatgacaattcaattcgatatggtgagcataat 329  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  43131908 ttaactgttgaaaattagaatatttagaatcacaacgtatttgatccacctcaatttcatgtcttgaaatgacaa-tcaattcgatatgatgagcataat 43132006  T
Q  330 tataattatgtctaacatttgtgaaggttcatattgctttaaggccaggccattttattttaaatcatgaattatttccctttgcttct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43132007 tataattatgtctaacatttgtgaaggttcatattgctttaaggctaggccattttattttaaatcatgaattatttccctttgcttct 43132095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 4978776 - 4978868
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||||| ||||| |||| |  |||||||||||||||||| ||||||| || |||||||||||||||| || |||||| |||||||||||||    
T  4978776 tttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaatg 4978868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 4996684 - 4996776
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||||| ||||| |||| |  |||||||||||||||||| ||||||| || |||||||||||||||| || |||||| |||||||||||||    
T  4996684 tttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaatg 4996776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 27896562 - 27896454
Alignment:
Q  95 gaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacca 194  Q
    ||||| ||||||||| ||| |||| |||| |  ||||||||||  |||||||||||||| || |||| || ||||||||||| |||||||||||||||||    
T  27896562 gaatagaaaatttgttttagaaatataagctgttacttttgatttagtaataattacacaactttttaattaaaacttacttattttggttgtttaacca 27896463  T
Q  195 atgcctcaa 203  Q
     ||||||||    
T  27896462 ctgcctcaa 27896454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 1870509 - 1870611
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| |||||||||||| ||||| |||| ||  ||||||||| ||||||||||||||| |  |||||||||||| ||||||||||| |||| ||||||||    
T  1870509 aatagaaaatttgtcttgaaaatataagctttgacttttgattaagtaataattacac-atttttttataaaaagttacttgtttttgttgcttaaccaa 1870607  T
Q  196 tgcc 199  Q
    ||||    
T  1870608 tgcc 1870611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 7304352 - 7304434
Alignment:
Q  114 aaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    ||||||||||||| || |||| || |||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||    
T  7304352 aaaatgtaagtttttatttttaatgaagtaataattacactacgtttttataaaatcttatttgtttt-gttgtttaaccaatg 7304434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 44065744 - 44065828
Alignment:
Q  101 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggtt 185  Q
    |||||||| ||| ||||||||||||| ||||||| || |||||||||| ||||||| ||||| || ||| |||||||||||||||    
T  44065744 aaaatttgccttgaaaatgtaagtttttacttttaatgaagtaataatcacactacttttttgtacaaagttacttgttttggtt 44065828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 13738410 - 13738510
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||||||| ||||| || ||||| |||| |  ||||| |||| ||||||| ||||||| |  |||||||||||||||||||||||||| || ||||||||    
T  13738410 aataaaaattttgttttgaaaatataagatgttacttctgataaagtaatgattacacaatttttttataaaaacttacttgttttggatgcttaaccaa 13738509  T
Q  196 t 196  Q
    |    
T  13738510 t 13738510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 13835934 - 13835835
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| ||||| |||||| ||||| |||||||  |||||| || |||||||||||||||||  |||||||||||| ||| || ||||| ||| ||||||||    
T  13835934 aatagaaaatctgtcttgaaaatataagttttgactttttattaagtaataattacacta-ttttttataaaaaattatttattttgcttgcttaaccaa 13835836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 6315950 - 6315883
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgc 198  Q
    ||||||||||||||| ||||||| |  |||||| ||||| ||| ||||||||| ||||||||||||||    
T  6315950 ttttgatcaagtaatgattacacaatttttttacaaaaatttatttgttttggatgtttaaccaatgc 6315883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 34501609 - 34501707
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    ||||||||| ||||||||||||| ||| |||  | |||| || ||||||||||||||| |  |||||||||||| ||| ||| |||||||| ||||||||    
T  34501609 aataaaaaagttgtcttaaaaatataatttttgattttttattaagtaataattacac-aattttttataaaaagttatttgatttggttgcttaaccaa 34501707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 36766699 - 36766764
Alignment:
Q  84 aaagaatccttgaataaaaaatttgtcttaaaaatgt---aagtttatacttttgatcaagtaata 146  Q
    ||||||||| ||||||||||||||||||| |||||||   |||||  |||||||||||||||||||    
T  36766699 aaagaatccatgaataaaaaatttgtcttgaaaatgtaacaagttgttacttttgatcaagtaata 36766764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 38193709 - 38193772
Alignment:
Q  111 ttaaaaatgtaagtttatacttttgatcaagtaataattacactaccttttt-ataaaaactta 173  Q
    |||||||||||||||| || ||||||| || ||||||||||||||| ||||| |||||||||||    
T  38193709 ttaaaaatgtaagtttttatttttgatgaaataataattacactacttttttcataaaaactta 38193772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 33635213 - 33635181
Alignment:
Q  171 ttacttgttttggttgtttaaccaatgcctcaa 203  Q
    |||||||||||||||||||||||||||||||||    
T  33635213 ttacttgttttggttgtttaaccaatgcctcaa 33635181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 5525309 - 5525404
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 200  Q
    |||||||| |||| ||||| |  ||| ||||| ||| |||| |||| ||||| ||||  ||||||||||||| |||| |||| |||||||||||||    
T  5525309 tttgtcttgaaaacgtaagatgttacatttgaccaaataatgattatactactttttattaaaaacttacttattttagttgcttaaccaatgcct 5525404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 23453443 - 23453340
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttt-tataaaaacttacttgttttggttgtttaacca 194  Q
    |||||||| |||||||| ||||| |||| |  ||||||||||||| |||  ||||||| || ||||  |||||||||| |||||||||| |  |||||||    
T  23453443 aataaaaattttgtcttgaaaatataagatgttacttttgatcaaataaagattacacaactttttccataaaaacttgcttgttttggatacttaacca 23453344  T
Q  195 atgc 198  Q
    ||||    
T  23453343 atgc 23453340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 41436388 - 41436319
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 200  Q
    ||||||| || |||| ||||||| || |||| || |||||||||||||||||| || ||||||| |||||    
T  41436388 ttttgataaaataatgattacacaactttttcatgaaaacttacttgttttggatgcttaaccattgcct 41436319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 4623745 - 4623817
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaa 168  Q
    |||||||||||||| |||||| | ||||||  ||||||| | ||| |||||||||||| |  |||||||||||    
T  4623745 aataaaaaatttgtgttaaaattataagttgttacttttaaccaactaataattacaccaattttttataaaa 4623817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 21646535 - 21646594
Alignment:
Q  139 aagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||||||||||| ||| |||| || |||||||||||  ||||| |||||||||||||||    
T  21646535 aagtaataattacattactttttaatgaaaacttacttcatttgg-tgtttaaccaatgcc 21646594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 28331304 - 28331368
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    ||||||||||||||| ||||||| ||  ||| |||||||||||||| |||||  || ||||||||    
T  28331304 ttttgatcaagtaatgattacacaactctttcataaaaacttacttattttgaatgcttaaccaa 28331368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 33635607 - 33635555
Alignment:
Q  100 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 152  Q
    ||||||||||||| ||||| ||| |||  ||||||||| ||||||||||||||    
T  33635607 aaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattaca 33635555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 18031 - 18135
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac-ctttttataaaaacttacttgttttggttgtttaacca 194  Q
    |||| ||||||| |||||||||| |||||||  ||||||||| ||||||||||||||| ||  |||||||||||| |||||||||||||||| |||||||    
T  18031 aatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacacaactttttttataaaaagttacttgttttggttgcttaacca 18130  T
Q  195 atgcc 199  Q
    |||||    
T  18131 atgcc 18135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 6102926 - 6102823
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| |||||||||||| ||||| |||||||  ||||||||| |||||||||||||| || ||||| ||||||| |||||| ||||||||| ||||||||    
T  6102926 aatagaaaatttgtcttcaaaatataagttttgacttttgattaagtaataattacaata-cttttaataaaaagttacttattttggttgcttaaccaa 6102828  T
Q  196 tgcct 200  Q
    |||||    
T  6102827 tgcct 6102823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 28511182 - 28511265
Alignment:
Q  114 aaaatgtaagtttatacttttgatcaagtaataattacactac-ctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||||||||||| |||||||||| || |||||||||||||||  ||||||||||||||||| ||||||||||| |||||||||    
T  28511182 aaaatgtaagtttttacttttgatgaattaataattacactactttttttataaaaacttacatgttttggttgcttaaccaat 28511265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 16802125 - 16802026
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| |||||||||||| ||||| ||| |||  ||||||||| |||||||||||||| || ||||||||||||| ||| |||||||||||| ||||||||    
T  16802125 aatagaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattacatta-ctttttataaaaagttatttgttttggttgcttaaccaa 16802027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 30840618 - 30840716
Alignment:
Q  101 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 200  Q
    |||||||||||| ||||| |||| |  |||||||||||||||||| ||||||| | |||||| | |||||||||||||||||| || |||| ||||||||    
T  30840618 aaaatttgtcttgaaaatataagatgttacttttgatcaagtaatgattacac-aactttttttgaaaacttacttgttttggatgcttaatcaatgcct 30840716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 12036323 - 12036411
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggtt 185  Q
    |||| |||||||||||| ||||| |||||||  ||||||||| |||||||||||||| || ||||| ||||||| ||| || ||||||||    
T  12036323 aatagaaaatttgtcttgaaaatataagttttgacttttgattaagtaataattacatta-cttttaataaaaagttatttattttggtt 12036411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 7609590 - 7609657
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||| ||||||||||||||||| ||| |||| |||||||||||||| |||||| || ||||||||||||    
T  7609590 tttttatcaagtaataattacattactttttaataaaaacttacttcttttgg-tgcttaaccaatgcc 7609657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 1447606 - 1447672
Alignment:
Q  133 ttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||| ||||||||||||||||||| |||   ||||||||||||| |||| |||| ||||||||||||    
T  1447606 ttgaccaagtaataattacactacttttcattaaaaacttacttatttttgttgcttaaccaatgcc 1447672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 15139185 - 15139281
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    ||||||||||||||||| ||||| |||| ||  | ||||||| |||||||   |||||||| |||||||||||| |||||| ||||| ||| ||||||||    
T  15139185 aataaaaaatttgtcttgaaaatataagatttgatttttgattaagtaat---tacactac-tttttataaaaaattacttattttgattgcttaaccaa 15139280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 3600208 - 3600108
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    ||||||| ||||||||| ||||| |||||||  | |||| || |||||||||||||| || ||||||||||||| ||  || ||||||||| |||| |||    
T  3600208 aataaaatatttgtcttgaaaatataagttttgaattttaattaagtaataattacatta-ctttttataaaaagttttttattttggttgcttaatcaa 3600110  T
Q  196 tg 197  Q
    ||    
T  3600109 tg 3600108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 14044727 - 14044772
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaactta 173  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||    
T  14044727 tacttttgatcaagtaattattacacaacttttttataaaaactta 14044772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 14152487 - 14152587
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaacca 194  Q
    |||| ||||||| |||||||| |  ||||||| | |||| || ||||||||||||||| | |||||||| ||||| |||||||||||||||  |||||||    
T  14152487 aatagaaaatttatcttaaaattaaaagtttagattttttatgaagtaataattacacca-ctttttataaaaaagttacttgttttggttacttaacca 14152585  T
Q  195 at 196  Q
    ||    
T  14152586 at 14152587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 22294047 - 22293982
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||||||| |||| ||| ||| || |||| ||||||||||||||||||||  ||||||||||||    
T  22294047 ttttgatcaaataattattgcacaactttttcataaaaacttacttgttttgaatgtttaaccaat 22293982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 14863401 - 14863334
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||| ||||||||||||||||| ||  |||| |||||||||||||| |||||| || ||||||||||    
T  14863401 actttttatcaagtaataattacattaatttttaataaaaacttactttttttgg-tgcttaaccaatg 14863334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 39034478 - 39034569
Alignment:
Q  108 gtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttt-tataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    ||||| ||||| |||||||  ||||||||| |||||||||||||||||  |||| || ||||| ||| |||||||||||| | ||||||||||    
T  39034478 gtcttgaaaatataagttttgacttttgattaagtaataattacactatattttataaaaaaaatta-ttgttttggttgctaaaccaatgcc 39034569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 2835650 - 2835701
Alignment:
Q  111 ttaaaaatgtaagtttatacttttgatcaagtaataattacactaccttttt 162  Q
    |||||||||||| ||| |||||||||| |||||||| ||||| |||||||||    
T  2835650 ttaaaaatgtaaatttttacttttgataaagtaatatttacattaccttttt 2835701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 6830320 - 6830262
Alignment:
Q  142 taataattacactacctttttataaaaac-ttacttgttttggttgtttaaccaatgcct 200  Q
    ||||||||||||||| |||| |||||||  |||||||||||||||| |||||||||||||    
T  6830320 taataattacactac-ttttaataaaaaaattacttgttttggttgcttaaccaatgcct 6830262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 7224133 - 7224035
Alignment:
Q  99 aaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgc 198  Q
    |||||| |||| || | ||||||||||| ||||||| || |||  |||||||||||| | |||||||||||||| | | ||||||||| ||||| |||||    
T  7224133 aaaaaaattgtgttgagaatgtaagtttttacttttaatgaagcgataattacactatc-ttttataaaaacttgcatattttggttgcttaactaatgc 7224035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 2611197 - 2611266
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||| || |||||||||||||| ||| |||| ||||||||||||||  ||||| || ||||||||||||    
T  2611197 actttttattaagtaataattacattactttttaataaaaacttacttcatttgg-tgcttaaccaatgcc 2611266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 11320190 - 11320094
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctcaacgatattggctaatattctcctta 227  Q
    |||||| ||||||||||||||||| ||| |||| ||||||| | |||| |||||| || |||||||||| ||||| || | ||| ||| ||||||||||    
T  11320190 actttttatcaagtaataattacattactttttaataaaaattaactt-ttttgg-tgcttaaccaatgtctcaatgacactggttaacattctcctta 11320094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 8435122 - 8435049
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctca 202  Q
    |||||||| ||| ||||||||| || |  |||| |||||| ||||||| |||||| || |||||||||||||||    
T  8435122 acttttgaccaactaataattataccattttttaataaaatcttacttattttggatgcttaaccaatgcctca 8435049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 11816009 - 11815924
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    |||| ||| |||||||| ||||| |||| |  |||||||||| ||||||| |||||||    |||| |||||||||||||||||||    
T  11816009 aatagaaattttgtcttgaaaatataagatgttacttttgataaagtaatgattacacatatttttcataaaaacttacttgtttt 11815924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 21052676 - 21052743
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||| |||||||||||||||||  |  |||| |||||||||||||| |||||| || ||||||||||    
T  21052676 actttttatcaagtaataattacatgattttttaataaaaacttacttcttttgg-tgcttaaccaatg 21052743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 27544652 - 27544584
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||| |||| ||||| ||||||| || |||| || |||| ||||||||||||| |||||||| ||||||    
T  27544652 tttttatcatgtaatgattacacaactttttcatgaaaatttacttgttttggatgtttaactaatgcc 27544584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 30293838 - 30293894
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 152  Q
    |||| ||| |||||||||||||| |||| |  |||||||||||||||||| ||||||    
T  30293838 aatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattaca 30293894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 35290730 - 35290678
Alignment:
Q  101 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 153  Q
    |||||||||||||||||| || ||||  ||||||||| |||||||| ||||||    
T  35290730 aaaatttgtcttaaaaatatatgttttgacttttgattaagtaatatttacac 35290678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 34236278 - 34236175
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttt-tataaaaacttacttgttttggttgtttaacca 194  Q
    ||||||||||||||| | ||||| |||||||| ||||||||| |||| ||||||||||||  |||| || ||||| ||||||||||||||||||||||||    
T  34236278 aataaaaaatttgtcctgaaaatataagttta-acttttgattaagtgataattacactattttttataaaaaaaattacttgttttggttgtttaacca 34236180  T
Q  195 atgcc 199  Q
    |||||    
T  34236179 atgcc 34236175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 48202558 - 48202480
Alignment:
Q  121 aagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||| | |||||||| ||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||    
T  48202558 aagtttttgcttttgatgaagtaataattacactaccttcttataaaaacttacctgttttgtttgcttaaccaatgcc 48202480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 16831116 - 16831219
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| ||||||||| |||||||| ||| |||  ||||||||| |||||||||||| |||| ||||||||||||| ||| |||||||||||| |||| |||    
T  16831116 aatataaaatttgttttaaaaatataaattttgacttttgattaagtaataattatacta-ctttttataaaaagttatttgttttggttgcttaatcaa 16831214  T
Q  196 tgcct 200  Q
    |||||    
T  16831215 tgcct 16831219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 55090874 - 55090779
Alignment:
Q  100 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||||||||||| ||||| |||||||  ||||||||| |||| |||||||||| | ||||||||||||| ||||||||||| |||| |||||||||    
T  55090874 aaaaatttgtcttgaaaatataagttttgacttttgattaagttataattacac-aactttttataaaaagttacttgttttagttgcttaaccaat 55090779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 53142879 - 53142777
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    ||||||||||||||| | ||||| |||||||  ||||||||| ||||||||||||||  |  |||||||||||| ||| |||||| ||||| ||||||||    
T  53142879 aataaaaaatttgtcatgaaaatataagttttaacttttgattaagtaataattacatcatttttttataaaaagttatttgtttcggttgcttaaccaa 53142780  T
Q  196 tgc 198  Q
    |||    
T  53142779 tgc 53142777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 20775170 - 20775069
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||||||||||||||||| |||| |||| |  || |||||||||| |||| ||||||  || |||| ||||||||||||||||||||| || ||||||||    
T  20775170 aataaaaaatttgtcttagaaatataagatattatttttgatcaaataattattacataactttttcataaaaacttacttgttttggatgcttaaccaa 20775071  T
Q  196 tg 197  Q
    ||    
T  20775070 tg 20775069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 44740877 - 44740963
Alignment:
Q  111 ttaaaaatgtaagtttatacttttgatcaagtaat-aattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||||||||||||| || ||||||| ||||||| ||||| | ||  |||||||||||| |||||| |||||||||||||||||||    
T  44740877 ttaaaaatgtaagtttttaattttgatgaagtaattaattaaattatttttttataaaaatttacttattttggttgtttaaccaat 44740963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 51100041 - 51100143
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaacca 194  Q
    |||| ||||||| | || ||||| |||||||  ||||||||| |||||||||||||||||| |||| || ||||| |||||||||||| ||||||||| |    
T  51100041 aatagaaaatttattttgaaaatataagttttaacttttgattaagtaataattacactactttttaataaaaaagttacttgttttgattgtttaacaa 51100140  T
Q  195 atg 197  Q
    |||    
T  51100141 atg 51100143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 27284138 - 27284067
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    ||||||||||||| |||| ||| ||| || |||||||||||||||| || |||||| |||||||||||||||    
T  27284138 tacttttgatcaaataatgattgcacaacttttttataaaaacttatttattttggatgtttaaccaatgcc 27284067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 2565458 - 2565510
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttt 180  Q
    |||||||||||||||||| ||||||| || ||| |||||||||||||||||||    
T  2565458 tacttttgatcaagtaatgattacacaacttttctataaaaacttacttgttt 2565510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 50101295 - 50101395
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    ||||||||||||||||||||||| |||||||  | ||||||| || || |||||| |  |  |||||||||||| ||| |||||||| |||||||| |||    
T  50101295 aataaaaaatttgtcttaaaaatataagttttgatttttgattaaatattaattatatcatttttttataaaaaattatttgttttgattgtttaatcaa 50101394  T
Q  196 t 196  Q
    |    
T  50101395 t 50101395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 2824863 - 2824934
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||||||||||||||| ||||||| || |||| |||||||||| |||||||| | || |||| |||||||    
T  2824863 tacttttgatcaagtaatgattacacaacattttcataaaaacttgcttgttttagatgcttaatcaatgcc 2824934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 2908226 - 2908328
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| |||||||||||| ||||| ||| |||  | ||||||  ||||||||||||||| || ||| |||||||| | |||| ||||||||| ||||||||    
T  2908226 aatagaaaatttgtcttgaaaatataaattttgatttttgagtaagtaataattacaccac-tttctataaaaagtcacttattttggttgcttaaccaa 2908324  T
Q  196 tgcc 199  Q
    ||||    
T  2908325 tgcc 2908328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 12095024 - 12094961
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaa 191  Q
    |||||||||| ||||||| ||||||| || |||| |||||||||||||| |||||| |||||||    
T  12095024 tacttttgataaagtaatgattacacaactttttcataaaaacttacttattttggatgtttaa 12094961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 52837314 - 52837385
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||||||||| ||||| ||||||| || |||| ||||||| || |||||||||| || ||||||||||||    
T  52837314 tacttttgatcacgtaattattacacaactttttcataaaaattttcttgttttggatgcttaaccaatgcc 52837385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 5645662 - 5645747
Alignment:
Q  96 aataaaaaatttgtctt-aaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    |||| |||||||||||| |||||  |||||||  ||||||||| || |||||||||||||| ||||||||||||| ||| |||||||    
T  5645662 aatagaaaatttgtcttgaaaaaattaagttttgacttttgattaaataataattacacta-ctttttataaaaagttatttgtttt 5645747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 9119339 - 9119242
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaacc 193  Q
    |||| |||||||||  | ||||| |||||||  ||||||||| |||||| |||||||||| ||||| || ||||| |||||||||||||||| ||||||    
T  9119339 aatagaaaatttgtggtgaaaatataagttttgacttttgattaagtaacaattacacta-cttttaataaaaaaattacttgttttggttgcttaacc 9119242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 19480603 - 19480550
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    |||||||||| ||||||| ||||||| || |||| |||||||||||||||||||    
T  19480603 tacttttgataaagtaatgattacacaactttttcataaaaacttacttgtttt 19480550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 32325121 - 32325053
Alignment:
Q  97 ataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataa 166  Q
    |||||||||||||||| ||||| ||| |||  ||||||||| ||||||||||||||| | ||||||||||    
T  32325121 ataaaaaatttgtcttgaaaatataatttttgacttttgattaagtaataattacacca-ctttttataa 32325053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 41142307 - 41142412
Alignment:
Q  94 tgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacc 193  Q
    |||||||||| |||||||| ||||  |||| |  |||||||||| || ||||||||||| ||| ||||| | |||| ||||||||||||  || ||||||    
T  41142307 tgaataaaaattttgtcttgaaaaaataaggtcttacttttgattaaataataattacattacttttttgtgaaaatttacttgttttgaatgcttaacc 41142406  T
Q  194 aatgcc 199  Q
    | ||||    
T  41142407 attgcc 41142412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 19248981 - 19248898
Alignment:
Q  101 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggtt 185  Q
    |||||||||||||||||| |||||||  | |||| || ||||||| |||||| |  ||||||||||||| ||| |||||||||||    
T  19248981 aaaatttgtcttaaaaatataagttttgatttttaattaagtaatgattaca-tcactttttataaaaaattagttgttttggtt 19248898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 31647786 - 31647715
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctc 201  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||| || |||||| || ||||||||| ||||    
T  31647786 actttttatcaagtaataattacattactttttaataaaaacttatttcttttgg-tgcttaaccaatacctc 31647715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 4860215 - 4860137
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttact 175  Q
    |||| ||||||||| || ||||| |||||||  ||||||||| |||||||||||||| | | |||||||||||| |||||    
T  4860215 aatagaaaatttgttttgaaaatataagttttgacttttgattaagtaataattaca-tccttttttataaaaaattact 4860137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 18744932 - 18744893
Alignment:
Q  158 tttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  18744932 tttttataaaaacttgcttgttttggatgtttaaccaatg 18744893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 35808568 - 35808621
Alignment:
Q  143 aataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    ||||||||||| || |||||||||||| |||||| ||||||||| ||||||||||    
T  35808568 aataattacacaac-tttttataaaaagttacttattttggttgcttaaccaatg 35808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 14347141 - 14347209
Alignment:
Q  100 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa 169  Q
    |||||||| |||||||||| |||||||  | ||||||| |||||||||||| ||||  ||||||||||||    
T  14347141 aaaaatttatcttaaaaatataagttttgatttttgattaagtaataattatacta-ttttttataaaaa 14347209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 30694349 - 30694284
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||||||||||||||||| ||  |  |||| | |||||||||||||||||||||  ||||||||    
T  30694349 ttttgatcaagtaataattatacctctgttttgtgaaaacttacttgttttggttgcataaccaat 30694284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 45921354 - 45921411
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 153  Q
    |||| |||||||||||| ||||| |||||||  ||| ||||| |||||||||||||||    
T  45921354 aatagaaaatttgtcttgaaaatataagttttgactattgattaagtaataattacac 45921411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 12076443 - 12076543
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||||||| |||||||| ||||| |||| |  || ||||||||||| ||| || |||| |  |||| || | |||||||||||||| | |||||||||||    
T  12076443 aataaaaattttgtcttgaaaatataagatgttaattttgatcaagcaatgatcacacaattttttgatgagaacttacttgttttagatgtttaaccaa 12076542  T
Q  196 t 196  Q
    |    
T  12076543 t 12076543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 48524545 - 48524493
Alignment:
Q  144 ataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||||||| |  |||||||||||| |||||||||||||||| |||| ||||    
T  48524545 ataattacacaatttttttataaaaagttacttgttttggttgcttaatcaat 48524493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 27596 - 27513
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttt 180  Q
    ||||||||||||||||| ||||| |||||||  ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  27596 aataaaaaatttgtctttaaaatataagttttgacttttgattaagtaataattacacta-ctttttataaaaagttacttgttt 27513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 33148155 - 33148249
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||||||||||| |||| |  |||||||||||||||||| ||||||| |  |||| ||||||||||||||||||||  |||||||| ||||||    
T  33148155 tttgtcttaaaaatataagatgctacttttgatcaagtaatgattacacaattttttcataaaaacttacttgttttgaatgtttaacaaatgcc 33148249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 39238938 - 39238844
Alignment:
Q  87 gaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    |||||| | |||||||| ||| |||||||||||||||||  ||| |||||||||||||| |||||||||  ||||  ||||||||||||||||||    
T  39238938 gaatccataaataaaaattttctcttaaaaatgtaagttgttacatttgatcaagtaatgattacactattttttattaaaaacttacttgtttt 39238844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 34382648 - 34382748
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||||||||||| |||||||||| |||||||  | ||||||| ||  ||||||||||| || |||||||||||| |||||||||||| ||||| ||||||    
T  34382648 aataaaaaatttatcttaaaaatataagttttaatttttgattaaacaataattacacaac-tttttataaaaagttacttgttttgattgttaaaccaa 34382746  T
Q  196 tg 197  Q
    ||    
T  34382747 tg 34382748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 35876847 - 35876767
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttactt 176  Q
    ||||||||||||||||||||||| |||||||  ||||||||| ||| || ||| ||||||  |||||||||||| ||||||    
T  35876847 aataaaaaatttgtcttaaaaatataagttttaacttttgattaaggaacaataacactatttttttataaaaagttactt 35876767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 49731186 - 49731278
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||||| || ||||||| |  ||| ||||| ||| ||||||||| ||||| ||||  |||||||||||||||||| |||||||||||||||    
T  49731186 tttgtcttgaagatgtaagatgttacatttgaccaaataataattatactactttttattaaaaacttacttgttttagttgtttaaccaatg 49731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 35873561 - 35873495
Alignment:
Q  84 aaagaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 150  Q
    |||||||| || ||||||||||||||||| ||||||||| ||| ||||||| || ||||||||||||    
T  35873561 aaagaatctttaaataaaaaatttgtcttcaaaatgtaaatttttacttttcatgaagtaataatta 35873495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 11449158 - 11449073
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    ||||||||||||||||||||||| |||  |  || ||||||||| ||||||||||||  || |||| |||||||||||||| ||||    
T  11449158 aataaaaaatttgtcttaaaaatataatatgttaattttgatcatgtaataattacataactttttcataaaaacttacttatttt 11449073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 13969146 - 13969214
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||||| || ||||||| ||||||| |  |||| |||||||||||||||||||||||| |||||||||    
T  13969146 tacttttaattaagtaattattacacaattttttcataaaaacttacttgttttggttgcttaaccaat 13969214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 31884510 - 31884579
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctc 201  Q
    |||| ||||| ||||||||||| ||| |||| |||||||||||||| |||||| || ||||||||||||||    
T  31884510 tttttatcaaataataattacattactttttaataaaaacttactttttttgg-tgcttaaccaatgcctc 31884579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 33149027 - 33148902
Alignment:
Q  64 aagggtcttgctact-agttaaaagaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactaccttttt 162  Q
    ||||||||||||| | || | ||||||||| | | || |||||||||||| |||| |||||||  ||||    ||||||||||||||||||||| ||||     
T  33149027 aagggtcttgctaatcaggttaaagaatccataagtagaaaatttgtcttgaaaaagtaagttgttacta---atcaagtaataattacactacttttta 33148931  T
Q  163 ataaaaacttacttgttttggttgtttaa 191  Q
     ||||||||||||| |||| |||| ||||    
T  33148930 ttaaaaacttacttattttagttgcttaa 33148902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 38597545 - 38597475
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    ||||||||| ||||||| |||| || || ||||||| |||||||||||||||||| |  ||||||||||||    
T  38597545 acttttgattaagtaatgattagacaacttttttattaaaacttacttgttttggatacttaaccaatgcc 38597475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 31160824 - 31160752
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa 169  Q
    |||| |||||||||||||||||| ||| |||  ||||||||| |||||||||||||| |  |||||||||||||    
T  31160824 aatagaaaatttgtcttaaaaatataaattttgacttttgattaagtaataattaca-tcactttttataaaaa 31160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 26890115 - 26890183
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||||||  || || ||||||||||||   ||||||||||||||||||||||||||  |||||||||    
T  26890115 tacttttgactaactattaattacactactcatttataaaaacttacttgttttggttacttaaccaat 26890183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 28490669 - 28490736
Alignment:
Q  101 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa 169  Q
    |||||||||||||||||| |||||||  | ||||| | ||||||||||||||| | |||||||||||||    
T  28490669 aaaatttgtcttaaaaatataagttttgatttttgcttaagtaataattacac-aactttttataaaaa 28490736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 40391266 - 40391337
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctc 201  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||| ||||  ||||| || ||||||||||||||    
T  40391266 actttttatcaagtaataattacattactttttgataaaaactcacttcatttgg-tgcttaaccaatgcctc 40391337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 46295918 - 46295982
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaac 192  Q
    |||||||||||||||||| || |||| || |||| ||||||||||| ||||||||| || |||||    
T  46295918 tacttttgatcaagtaatcatgacacaactttttcataaaaacttatttgttttggatgcttaac 46295982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 17644838 - 17644905
Alignment:
Q  166 aaaacttacttgttttggttgtttaaccaatgcctcaacgatattggctaatattctccttaatttaa 233  Q
    |||||||||||||||||| || ||||||| |||| ||| || ||||| ||  ||||||||||||||||    
T  17644838 aaaacttacttgttttggatgcttaaccattgccccaaggacattggttagcattctccttaatttaa 17644905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 36160623 - 36160564
Alignment:
Q  139 aagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgc 198  Q
    |||||||||||||||||| ||||  ||| ||||||||||||||  ||| |||||||||||    
T  36160623 aagtaataattacactactttttattaagaacttacttgttttaattgcttaaccaatgc 36160564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 5069731 - 5069698
Alignment:
Q  166 aaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||||||||||||||| |||||||||||||||    
T  5069731 aaaacttacttgttttggatgtttaaccaatgcc 5069698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 27742617 - 27742549
Alignment:
Q  130 cttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    ||||| || |||||||||||||| ||| |||| ||||||| |||||| |||| |||| ||||||||||||    
T  27742617 ctttttattaagtaataattacattactttttaataaaaaattacttctttt-gttgcttaaccaatgcc 27742549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 48887824 - 48887787
Alignment:
Q  164 taaaaacttacttgttttggttgtttaaccaatgcctc 201  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  48887824 taaaaacttacttgttttagttgcttaaccaatgcctc 48887787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 50127398 - 50127451
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggt 184  Q
    |||| ||| ||||||||||||| ||| |||| |||||||||||||| |||||||    
T  50127398 tttttatcgagtaataattacattactttttaataaaaacttacttcttttggt 50127451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 30109262 - 30109222
Alignment:
Q  158 tttttataaaaacttacttgttttggttgtttaaccaatgc 198  Q
    ||||||| |||||||||||||||||| ||||||| ||||||    
T  30109262 tttttattaaaacttacttgttttggatgtttaatcaatgc 30109222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 33337494 - 33337426
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||||||||| ||||||||||||||||| | | |||||||| ||| || |||| | || |||||||||    
T  33337494 tacttttgatcgagtaataattacactacttatctataaaaatttatttattttagatgcttaaccaat 33337426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 18131289 - 18131188
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| |||||||||||| ||||| |||||||  |||  |||| |||||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||    
T  18131289 aatagaaaatttgtcttgaaaatataagttttgactactgattaagtaataattacactac-ttttaataaaaagttacttgttttggttgcttaaccaa 18131191  T
Q  196 tgc 198  Q
    |||    
T  18131190 tgc 18131188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 30924208 - 30924284
Alignment:
Q  123 gtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 200  Q
    |||| |||||||||| |||||||||||||||||  |||||||||||| |||||| |||||||||||| ||||||||||    
T  30924208 gtttttacttttgattaagtaataattacactat-tttttataaaaatttacttattttggttgtttgaccaatgcct 30924284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 3137498 - 3137397
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| ||| |||||||| |||||||||| |  |||||||||||||||||| ||||||| || |||| ||| ||||||| ||||||||| ||  |||||||    
T  3137498 aatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacacaactttttcatataaacttatttgttttggatgcctaaccaa 3137399  T
Q  196 tg 197  Q
    ||    
T  3137398 tg 3137397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 32881211 - 32881111
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||||||| |||||||||||||| |||| |  || |||| ||||||| || ||||||| || ||||  ||||||||||||| |||||| |||||||||||    
T  32881211 aataaaaattttgtcttaaaaatataagatattattttttatcaagttatgattacacaacattttattaaaaacttacttattttggatgtttaaccaa 32881112  T
Q  196 t 196  Q
    |    
T  32881111 t 32881111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 33621464 - 33621367
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||||||| |||||||||||||| |||  || |||||||||||||||||| ||||||      |||||| |||| ||||||||||||| |||||||||||    
T  33621464 aataaaaattttgtcttaaaaatataaaattttacttttgatcaagtaattattaca-----attttat-aaaatttacttgttttggatgtttaaccaa 33621371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 10451997 - 10451893
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataa-ttacactacctttttat-aaaaacttacttgttttggttgtttaacc 193  Q
    |||||||| ||||| |||||||| |||||||  ||||||||| ||||||||| |||||| |  ||||||| ||||| ||||||||||| |||| ||||||    
T  10451997 aataaaaattttgtattaaaaatataagttttgacttttgattaagtaataatttacacca-ttttttataaaaaaattacttgttttagttgcttaacc 10451899  T
Q  194 aatgcc 199  Q
    ||||||    
T  10451898 aatgcc 10451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 40607396 - 40607324
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa 169  Q
    |||| ||||||| |||||||||| |||||||  ||||||||| ||||||||||||||||| ||||| |||||||    
T  40607396 aatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacacta-cttttaataaaaa 40607324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 34678222 - 34678325
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| |||||||||||| |||||||||  |  ||||||||||||||||||||||||| ||  ||||||| |||| || |||||||||  || |||||||     
T  34678222 aatagaaaatttgtcttgaaaatgtaaaatgttacttttgatcaagtaataattaca-taattttttattaaaagttgcttgttttgaatgcttaaccat 34678320  T
Q  196 tgcct 200  Q
    |||||    
T  34678321 tgcct 34678325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 43917653 - 43917585
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||||| ||||| |||||||||||| |  |||||||||||| ||||||||||||| || |||||||||    
T  43917653 tacttttaatcaaataataattacacaatttttttataaaaatttacttgttttggatgcttaaccaat 43917585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 44655286 - 44655350
Alignment:
Q  133 ttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||| ||||||||||||||||||| ||||  |||||||||| || |||||||||||||| |||||    
T  44655286 ttgaccaagtaataattacactactttttattaaaaacttatttattttggttgtttaatcaatg 44655350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 4989793 - 4989715
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttact 175  Q
    ||||||||||||||||| ||||| |||||||  | |||||||||||||| ||||||| ||  |||||||||||| |||||    
T  4989793 aataaaaaatttgtcttgaaaatataagttttgatttttgatcaagtaacaattaca-taattttttataaaaagttact 4989715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 18117473 - 18117406
Alignment:
Q  259 tcacaacgtatttgatccacctcaatttcatgtcttgaaatgacaattcaattcgatatggtgagcat 326  Q
    |||||| || ||||||||| || ||||| ||||| | |||||||||||||||| ||||||||||||||    
T  18117473 tcacaaggtctttgatccatcttaatttgatgtcctaaaatgacaattcaattagatatggtgagcat 18117406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 10029228 - 10029159
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||||||||||||||| |||| || || |||| ||||||| ||||||| ||||| || ||||||||||    
T  10029228 tacttttgatcaagtaatgattatacaactttttcataaaaatttacttgatttggatgcttaaccaatg 10029159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 18200696 - 18200792
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaac 192  Q
    |||||||| |||||||||||||| |||  |  |||||||||| ||||||| ||||||| |  |||| |||||| ||||||| |||||| || |||||    
T  18200696 aataaaaattttgtcttaaaaatataacatgttacttttgattaagtaatgattacacaattttttcataaaagcttacttattttggatgcttaac 18200792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 35901431 - 35901531
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| ||| ||||| || |||||||||| |  ||||||| || || |||| ||| ||| || |||| ||||||||||||||||||||| || ||||||||    
T  35901431 aatagaaattttgttttgaaaatgtaagatgttacttttaattaaataatgattgcacaactttttcataaaaacttacttgttttggatgcttaaccaa 35901530  T
Q  196 t 196  Q
    |    
T  35901531 t 35901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 11151020 - 11150918
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||||||  ||||||||| |||| |||| |  ||||||||||||| |||| ||||||| |  ||||| ||||||||||||| |||||  || ||||||||    
T  11151020 aataaaatttttgtcttagaaatataagatgttacttttgatcaaataatgattacacaattttttt-taaaaacttacttattttgaatgcttaaccaa 11150922  T
Q  196 tgcc 199  Q
    ||||    
T  11150921 tgcc 11150918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 6270199 - 6270249
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    ||||||| ||||||| ||||||| || ||||||| ||||||||||||||||    
T  6270199 ttttgataaagtaatgattacacaacttttttatgaaaacttacttgtttt 6270249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 20821978 - 20821908
Alignment:
Q  106 ttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttactt 176  Q
    ||||||||||||| ||| ||   |||||| || |||||||||||||| ||| |||| ||||||||||||||    
T  20821978 ttgtcttaaaaatataaattgtcactttttattaagtaataattacattactttttaataaaaacttactt 20821908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 37529978 - 37530078
Alignment:
Q  105 tttgtcttaaaaatgtaagtt---tatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctc 201  Q
    |||||||||||||| ||||||   | |||||||||| | || ||||||| || || |||| ||||||||||  || ||||| |||||||||||||| |||    
T  37529978 tttgtcttaaaaatataagttgtatctacttttgattatgttataattaaacaactttttaataaaaacttgtttcttttgattgtttaaccaatgactc 37530077  T
Q  202 a 202  Q
    |    
T  37530078 a 37530078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 27162881 - 27162832
Alignment:
Q  148 ttacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||| || ||||||||||||||| |||||||||| || ||||||||||    
T  27162881 ttacacaacttttttataaaaacttgcttgttttggatgcttaaccaatg 27162832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 900292 - 900351
Alignment:
Q  139 aagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||||||||| | ||| |||| ||||||||||||||  ||||| |||||||||||||||    
T  900292 aagtaataattatattactttttaataaaaacttactttatttgg-tgtttaaccaatgcc 900351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 17921710 - 17921802
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta-cctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||| |||||||||||| ||| ||| || ||| | |||||||||||| || | |||| ||||||| ||| ||||||||| | ||||||||||    
T  17921710 tttgttttaaaaatgtaaatttttacattcgatgatgtaataattacagtatcattttaataaaaatttaattgttttggatttttaaccaat 17921802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 20542453 - 20542382
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||||||| ||||||| ||||||| || ||||| | ||||||||||| ||||||| || ||||||||||||    
T  20542453 tacttttgattaagtaatgattacac-acttttttcttaaaaacttactcgttttggatgcttaaccaatgcc 20542382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 28462592 - 28462658
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||| || |||||||||||||| || ||||| ||||||||||||||  ||||| |||||||||||||    
T  28462592 actttttattaagtaataattacatta-cttttaataaaaacttacttcatttgg-tgtttaaccaatg 28462658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 10008259 - 10008190
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||| ||||||||||    
T  10008259 tacttttgatcaagtaataattacaccactttttaataaaaacttacttcttttggttgcttaaccaatg 10008190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 27082377 - 27082308
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    ||||||||||||| |||| ||||||| || |||| || |||| |||||||||||||||||||||||||||    
T  27082377 tacttttgatcaaataatcattacacaactttttcatgaaaatttacttgttttggttgtttaaccaatg 27082308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 2911491 - 2911583
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||||| |||||||||| |  ||| |||||||||||||| |||| ||||| ||||| |||||||||| |||||||  ||| ||||||||||    
T  2911491 tttgtcttgaaaatgtaagatgttacatttgatcaagtaatgattatactacttttttttaaaaacttatttgttttaattgcttaaccaatg 2911583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 5611144 - 5611276
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| ||| ||||||||| |||| |||| |  ||||||| ||||| ||||||||| || || | || ||||||||||||||||||||| |||||||||||    
T  5611144 aatagaaattttgtcttagaaatataagatgttacttttaatcaaataataattatacaacttattcataaaaacttacttgttttggatgtttaaccaa 5611243  T
Q  196 tgcctcaacgatattggctaatattctccttaa 228  Q
    | |||  | |||| ||| ||  |||||||||||    
T  5611244 tacctttatgatactggttagcattctccttaa 5611276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 9213059 - 9213160
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaactta---cttgttttggttgtttaac 192  Q
    ||||||||||||||||| ||||| || ||||  | ||||||||||||||||||||||||| ||||||||||||| |||   ||||||||||||  |||||    
T  9213059 aataaaaaatttgtcttgaaaat-tatgtttg-atttttgatcaagtaataattacacta-ctttttataaaaagttactgcttgttttggtttcttaac 9213155  T
Q  193 caatg 197  Q
    |||||    
T  9213156 caatg 9213160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 6770932 - 6770828
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactaccttttt-ataaaaacttacttgttttggttgtttaacca 194  Q
    |||| ||||||| |||| ||||| ||| |||  ||||||||| || |||||||||||  || ||||| ||||||| | |||||||||||||| |||||||    
T  6770932 aatagaaaatttatcttgaaaatataaattttgacttttgattaaataataattacataactttttttataaaaagtgacttgttttggttgcttaacca 6770833  T
Q  195 atgcc 199  Q
    |||||    
T  6770832 atgcc 6770828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 18493309 - 18493241
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||||||||||||||| ||||||  || |||||||||||||||||||| ||||  | ||||||||||    
T  18493309 tacttttgatcaagtaattattacaaaacttttttataaaaacttacttgatttgaatatttaaccaat 18493241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 32800303 - 32800199
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta-cctttttataaaaacttacttgttttggttgtttaacca 194  Q
    |||| |||||||||||||||||| |||||||  | ||||||| || |||||||||||| |   |||||||||||| |||||  ||||||||| ||||| |    
T  32800303 aatagaaaatttgtcttaaaaatataagttttgatttttgattaaataataattacaccattttttttataaaaaattactacttttggttgcttaacaa 32800204  T
Q  195 atgcc 199  Q
    |||||    
T  32800203 atgcc 32800199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 2613367 - 2613448
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactaccttttta--taaaaacttact 175  Q
    |||| ||| |||||||||||||| ||||||  |||||||||||||||||||||| ||  || ||||||  ||||||||||||    
T  2613367 aatagaaattttgtcttaaaaatataagttgctacttttgatcaagtaataatttcatcacatttttatgtaaaaacttact 2613448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 28048756 - 28048828
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa 169  Q
    |||| ||||||||| |||||||| |||||||  |||||| || ||||||||||||||| | |||||||||||||    
T  28048756 aatagaaaatttgttttaaaaatataagttttgacttttaattaagtaataattacacca-ctttttataaaaa 28048828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 31223251 - 31223190
Alignment:
Q  139 aagtaataattacactaccttttt-ataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    ||||||| ||||||| || ||||| || |||||||||||||||||| |||||||||||||||    
T  31223251 aagtaatgattacacaacttttttcatgaaaacttacttgttttggatgtttaaccaatgcc 31223190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 12677882 - 12677822
Alignment:
Q  132 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaac 192  Q
    ||||| |||||||| |||||||||| ||||  |||||||||||||||||| |||| |||||    
T  12677882 tttgaccaagtaatgattacactactttttattaaaaacttacttgttttagttgcttaac 12677822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 17835023 - 17835095
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 200  Q
    |||||||||| |||||||||||| || |  |||| || ||||||| |||||||||  ||||||||||||||||    
T  17835023 tacttttgattaagtaataattatacgattttttcatgaaaacttgcttgttttgaatgtttaaccaatgcct 17835095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 19659665 - 19659725
Alignment:
Q  132 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaac 192  Q
    ||||||||| |||| ||||||| || ||||||||||||||||||| |||| | ||||||||    
T  19659665 tttgatcaactaatgattacacaacttttttataaaaacttacttattttagatgtttaac 19659725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 30396454 - 30396498
Alignment:
Q  156 cctttttataaaaacttacttgttttggttgtttaaccaatgcct 200  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||||    
T  30396454 cctttttacaaaaacttatttgttttagttgtttaaccaatgcct 30396498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 20208193 - 20208228
Alignment:
Q  165 aaaaacttacttgttttggttgtttaaccaatgcct 200  Q
    ||||| ||||||||||||||||||||||||||||||    
T  20208193 aaaaagttacttgttttggttgtttaaccaatgcct 20208228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 22102216 - 22102251
Alignment:
Q  165 aaaaacttacttgttttggttgtttaaccaatgcct 200  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22102216 aaaaagttacttgttttggttgtttaaccaatgcct 22102251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 20208028 - 20208113
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttg 182  Q
    |||| ||||||||| || ||||| ||||| |  ||||||||| |||||||||||||| || ||||| |||||||  |||||||||||    
T  20208028 aatataaaatttgttttgaaaatataagtattgacttttgattaagtaataattacatta-cttttaataaaaagctacttgttttg 20208113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 22102051 - 22102136
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttg 182  Q
    |||| ||||||||| || ||||| ||||| |  ||||||||| |||||||||||||| || ||||| |||||||  |||||||||||    
T  22102051 aatataaaatttgttttgaaaatataagtattgacttttgattaagtaataattacatta-cttttaataaaaagctacttgttttg 22102136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 2398106 - 2398050
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 152  Q
    |||| ||||||| |||| ||||| |||||||  ||||||||| ||||||||||||||    
T  2398106 aatagaaaatttatcttgaaaatataagttttgacttttgattaagtaataattaca 2398050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 22552292 - 22552241
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    |||||| || |||||||||||||| || ||||||||||||| |||||||||||    
T  22552292 acttttaattaagtaataattaca-taactttttataaaaatttacttgtttt 22552241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 30699823 - 30699887
Alignment:
Q  132 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||| |||||||||||||||| || ||||  |||||||||| |||||||  |||||||| ||||    
T  30699823 tttgaccaagtaataattacacaacattttattaaaaacttatttgttttaattgtttaatcaat 30699887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 47445362 - 47445474
Alignment:
Q  87 gaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttg 186  Q
    |||||||| |||| ||| ||||  || ||||| ||||||| |||||||||| |||||||||||| ||||  ||||||||||||||||| |||| |||| |    
T  47445362 gaatccttaaatagaaattttgctttgaaaatataagtttttacttttgatgaagtaataattaaactatttttttataaaaacttacatgttctggtcg 47445461  T
Q  187 tttaaccaatgcc 199  Q
     ||||||||||||    
T  47445462 cttaaccaatgcc 47445474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 8656393 - 8656291
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttata-aaaacttacttgttttggttgtttaacca 194  Q
    |||| |||||||||||||||||  |||||||  ||||||||| |||||||||||| || || |||||||| |||| | |||||||||||||| |||||||    
T  8656393 aatagaaaatttgtcttaaaaaaataagttttaacttttgattaagtaataattataccacttttttataaaaaagtcacttgttttggttgcttaacca 8656294  T
Q  195 atg 197  Q
    |||    
T  8656293 atg 8656291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 16980031 - 16979937
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||||| ||||| |||| |  ||||||||||| ||||||||| |||| || |||| ||||||| ||||||||||||| || ||||||||||||    
T  16980031 tttgtcttgaaaatataagatgttacttttgatcgagtaataatcacacaactttttcataaaaatttacttgttttggatgcttaaccaatgcc 16979937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 37928363 - 37928297
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    ||||||| ||||||| ||||||| || ||||||||||||||||||| |||||| |||||||||||||    
T  37928363 ttttgataaagtaattattacacaacttttttataaaaacttacttattttggatgtttaaccaatg 37928297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 39786467 - 39786571
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaacca 194  Q
    |||| |||| ||||||| ||||| |||||||  ||||||||| || |||||||||||||| ||||| || ||||| ||| |||||||||||| |||||||    
T  39786467 aatagaaaacttgtcttgaaaatataagttttaacttttgattaaataataattacacta-cttttaataaaaaagttatttgttttggttgcttaacca 39786565  T
Q  195 atgcct 200  Q
    ||||||    
T  39786566 atgcct 39786571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 47537519 - 47537423
Alignment:
Q  100 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    ||||||||||||| ||||| |||||||  | ||||||| ||||||||||||||| | ||||||||||||| |||| |||||| |||| ||||| ||||    
T  47537519 aaaaatttgtcttgaaaatataagttttgatttttgattaagtaataattacac-aactttttataaaaagttacctgttttagttgcttaactaatg 47537423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 23142702 - 23142770
Alignment:
Q  131 ttttgatcaagtaataattacactaccttttt-ataaaaacttacttgttttggttgtttaaccaatgc 198  Q
    ||||||||||||||| ||||||| || ||||| |||||||||||||| |||||| ||||||||||||||    
T  23142702 ttttgatcaagtaattattacacaacttttttcataaaaacttacttattttggatgtttaaccaatgc 23142770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 24937929 - 24937827
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| ||||||||| |||||||| ||  |||  |||||| || ||||||||||||||| || |||||||||||| |||||| ||||||||  ||||||||    
T  24937929 aatagaaaatttgttttaaaaatatagattttgacttttaattaagtaataattacaccac-tttttataaaaagttacttattttggttccttaaccaa 24937831  T
Q  196 tgcc 199  Q
    ||||    
T  24937830 tgcc 24937827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 41760365 - 41760455
Alignment:
Q  107 tgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    |||||||||||||||||||| || |||| |||||||||| ||||||| || |||| |||||| |||| |  |||||| || ||||||||||    
T  41760365 tgtcttaaaaatgtaagtttttattttttatcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatg 41760455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 34834773 - 34834696
Alignment:
Q  114 aaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacc 193  Q
    ||||||||||||| || ||||||| |||||||||||  ||||||| |||||||||||||   ||||||||||| ||||||    
T  34834773 aaaatgtaagtttttatttttgatgaagtaataatt--actacctctttataaaaacttgaatgttttggttgcttaacc 34834696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 8896613 - 8896698
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    |||| ||| |||||||||||||| |||| |  |||||||||||| ||||| ||||||| |  |||| || ||||||||||||||||    
T  8896613 aatataaattttgtcttaaaaatataagatgttacttttgatcaggtaatgattacacaattttttcatgaaaacttacttgtttt 8896698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 7833794 - 7833862
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||| ||| |||| ||| |||||| |||| |||||| |||||||||||||| || ||||||||||||    
T  7833794 ttttgaccaactaattattgcactactttttaataaaatcttacttgttttggctgcttaaccaatgcc 7833862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 22931882 - 22931974
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 197  Q
    ||||||| | |||||||||||  |||  |||  ||| ||||||||||||||| ||||  | |||| |||||| ||||||||||||||||||||    
T  22931882 tttgtctcagaaatgtaagttgttacaattgcccaattaataattacactactttttattgaaaatttacttattttggttgtttaaccaatg 22931974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 33194832 - 33194720
Alignment:
Q  84 aaagaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttgg 183  Q
    ||||||||| | |||||||  |||||||||||||| |||  |   || |||||| ||||||| |||||||||| ||||  |||||| |||||| |||| |    
T  33194832 aaagaatccataaataaaagttttgtcttaaaaatataaactatcacatttgattaagtaatgattacactactttttattaaaaatttacttattttag 33194733  T
Q  184 ttgtttaaccaat 196  Q
    ||| |||||||||    
T  33194732 ttgcttaaccaat 33194720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 34993152 - 34993224
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttg 177  Q
    |||||||||||||| |||| |  |||||||||| || |||||||||||| || |||| || ||||||||||||    
T  34993152 tttgtcttaaaaatataagatgttacttttgataaaataataattacacaactttttcatgaaaacttacttg 34993224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 45907082 - 45907134
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    |||||| ||||||||||||||||| ||| |||| |||||||||||||| ||||    
T  45907082 actttttatcaagtaataattacattactttttaataaaaacttacttctttt 45907134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 12810166 - 12810265
Alignment:
Q  100 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||| |||||||||||||| |||| |  |||||||||  ||||||||||||||| || |||| || ||| | | |||||||| | |||||||||| ||||    
T  12810166 aaaattttgtcttaaaaatataagatattacttttgacaaagtaataattacacaactttttcatgaaagcatgcttgttttagatgtttaaccattgcc 12810265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 37532574 - 37532668
Alignment:
Q  101 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaacca 194  Q
    ||||||| | |||||||| ||| |||  ||||||||| ||| ||||||||||| |  ||||||| ||||| |||||||||| ||||| |||||||    
T  37532574 aaaatttatattaaaaatataaatttcgacttttgattaagaaataattacaccatttttttataaaaaagttacttgtttcggttgcttaacca 37532668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 39387003 - 39386917
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttg 182  Q
    |||||||||||| || ||||||| ||| |||  |||||||||||||||||||| | || || |||   |||||| ||||||||||||    
T  39387003 aataaaaaatttatcctaaaaatataaattttaacttttgatcaagtaataatcatacaacttttcattaaaaaattacttgttttg 39386917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 16685794 - 16685729
Alignment:
Q  132 tttgatcaagtaataattacactaccttttta-taaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||||||||||| ||||||| || |||| | ||||||||||||| |||||| || |||||||||    
T  16685794 tttgatcaagtaatgattacacaactttttaaataaaaacttacttattttggatgcttaaccaat 16685729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 17660030 - 17659965
Alignment:
Q  132 tttgatcaagtaataattacactaccttttta-taaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||||||||||| ||||||| || |||| | ||||||||||||| |||||| || |||||||||    
T  17660030 tttgatcaagtaatgattacacaactttttaaataaaaacttacttattttggatgcttaaccaat 17659965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 23317845 - 23317894
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttg 177  Q
    ||||||||||||||| || ||||||| || ||||||| ||||||||||||    
T  23317845 tacttttgatcaagttatgattacaccacttttttatgaaaacttacttg 23317894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 25780298 - 25780245
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatt 149  Q
    |||||||||||||||| |||||| |||||||  |||||| || |||||||||||    
T  25780298 aataaaaaatttgtctgaaaaatataagttttgacttttaattaagtaataatt 25780245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 26241656 - 26241717
Alignment:
Q  132 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacc 193  Q
    ||||||||| ||||||||| ||||| ||||  |||||| ||||||||||| |||| ||||||    
T  26241656 tttgatcaaataataattatactactttttattaaaaagttacttgttttagttgcttaacc 26241717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 33988492 - 33988545
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    ||||||| || |||||||| ||||||| |||||||||||||| ||| |||||||    
T  33988492 tactttttataaagtaatatttacacttcctttttataaaaatttagttgtttt 33988545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 46300762 - 46300678
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa-cttacttgttttggttgttt 189  Q
    |||||||| ||||| || ||||  |||||| |||| |||||||||||| |  ||||||||||||| |||||||||||| |||||||    
T  46300762 tttgtcttgaaaatatatgttttgactttttatcatgtaataattaca-tcactttttataaaaaccttacttgttttagttgttt 46300678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 21164729 - 21164669
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac 156  Q
    |||| ||| |||| ||| |||||| |||||| || ||||||| ||||||||||||||||||    
T  21164729 aatagaaattttgacttgaaaatgcaagtttttatttttgatgaagtaataattacactac 21164669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 42061270 - 42061222
Alignment:
Q  150 acactacctttttataaaaacttacttgttttggttgtttaaccaatgc 198  Q
    |||||| |||||  |||||||||||||||||| |||| |||||||||||    
T  42061270 acactatcttttattaaaaacttacttgttttagttgcttaaccaatgc 42061222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 30034 - 30106
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 200  Q
    ||||||| || || |||||||||||| | ||||| ||||||||||||||||||||  ||||||||||||||||    
T  30034 tacttttaattaaataataattacacaaacttttcataaaaacttacttgttttgagtgtttaaccaatgcct 30106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 4490862 - 4490779
Alignment:
Q  112 taaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||||| ||| ||| |||||||||| || |||||||||||||| ||||| || |||||||| |||||||| |||||||||||||    
T  4490862 taaaaatataaatttttacttttgataaaataataattacactatcttttaat-aaaacttatttgttttgattgtttaaccaat 4490779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 29032501 - 29032425
Alignment:
Q  105 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 181  Q
    |||||||||||||| |||| |  |||||||||||||||||| ||||||| || |||| |||||||||| ||||||||    
T  29032501 tttgtcttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttcataaaaacttgcttgtttt 29032425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 48338876 - 48338808
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    ||||||| ||||||| ||||||| || |||||||||||||||||||||||||| || ||||||| ||||    
T  48338876 ttttgataaagtaattattacacaacttttttataaaaacttacttgttttggatgcttaaccattgcc 48338808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 34228273 - 34228372
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 195  Q
    ||||||||||||||||||||||| ||| |||  ||||||||| || |||||||| || |  ||||||||||||| ||||| |||||  ||| ||||||||    
T  34228273 aataaaaaatttgtcttaaaaatataaattttgacttttgattaaataataatttca-tcactttttataaaaagttactcgttttaattgcttaaccaa 34228371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 37043037 - 37043099
Alignment:
Q  132 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacca 194  Q
    |||||||||||||| |||| ||||| ||||  |||||||||||||| ||| ||||||||||||    
T  37043037 tttgatcaagtaatgattatactactttttattaaaaacttacttgatttagttgtttaacca 37043099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 45408684 - 45408784
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaac-ttacttgttttggttgtttaacca 194  Q
    ||||||| ||||||||||||||| ||| |||  ||||| ||| |||||||| |||||| |  ||||||||||||  ||||||||||| ||||||||||||    
T  45408684 aataaaatatttgtcttaaaaatataacttttgacttt-gattaagtaatatttacaccat-tttttataaaaatgttacttgtttttgttgtttaacca 45408781  T
Q  195 atg 197  Q
    |||    
T  45408782 atg 45408784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 55446830 - 55446733
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacca 194  Q
    |||||||| ||||||||  |||| |||| |  ||||||| || ||||||| ||||||| || ||||||||||||||||||| |||| | ||||||||||    
T  55446830 aataaaaattttgtcttggaaatataagatgttacttttaataaagtaatgattacacaac-tttttataaaaacttacttcttttagatgtttaacca 55446733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 2127368 - 2127461
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacca 194  Q
    ||||||||||||||||||| ||| |   |||  | ||||||| ||||||||||||||| ||  ||||||||||| |||||| ||||||||| |||||||    
T  2127368 aataaaaaatttgtcttaagaatat---ttttgatttttgattaagtaataattacacgac--ttttataaaaaattacttattttggttgcttaacca 2127461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 2379631 - 2379719
Alignment:
Q  107 tgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||| ||||||||||||  | ||||  ||||||||| ||||||||||| |||| |||||||||||||| ||||| ||| |||| ||||    
T  2379631 tgtcttgaaaatgtaagttgttccttta-atcaagtaagaattacactactttttaataaaaacttacttattttgattgcttaatcaat 2379719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 4020161 - 4020096
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||||| ||||||| ||||||| |  |||| |||||||||||||||||||||||  |||||||||    
T  4020161 ttttgattaagtaattattacacaattttttcataaaaacttacttgttttggttacttaaccaat 4020096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 15671165 - 15671233
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgc 198  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||||||  |||||||  |||||||||||    
T  15671165 actttttatcaagtaataattacattactttttaataaaaacttacttcatttggtt-cttaaccaatgc 15671233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 42788343 - 42788448
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta-cctttttataaaaacttacttgttttggttgtttaacca 194  Q
    ||||| || ||||| || ||||||||| ||| |||||||||| || ||||||||||| ||   |||||||||||||||||  |||||| |||||||| ||    
T  42788343 aataacaattttgtattgaaaatgtaaatttttacttttgataaaataataattacattattttttttataaaaacttaccagttttgattgtttaatca 42788442  T
Q  195 atgcct 200  Q
     |||||    
T  42788443 gtgcct 42788448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 54801346 - 54801431
Alignment:
Q  97 ataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttg 182  Q
    ||||||||||| |||| ||||| |||| |  |||||||| | ||||||||||||||| |  |||| |||||||||||||| |||||    
T  54801346 ataaaaaatttatcttgaaaatataagatgttacttttgctaaagtaataattacacaattttttcataaaaacttacttattttg 54801431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 41287898 - 41287969
Alignment:
Q  96 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaa 168  Q
    |||| ||||||||| |||||||| |||||||  | ||||||| |||||||||||||||||  |||||||||||    
T  41287898 aatagaaaatttgttttaaaaatataagttttgatttttgattaagtaataattacacta-ttttttataaaa 41287969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 35322074 - 35322019
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggt 184  Q
    |||||| || |||||||||||||| ||| |||| |||||||||||||| |||||||    
T  35322074 actttttattaagtaataattacattactttttaataaaaacttacttcttttggt 35322019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 31069612 - 31069670
Alignment:
Q  133 ttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaa 191  Q
    |||| ||||||||||||||||||| ||||  ||||||| ||||| ||||||||| ||||    
T  31069612 ttgaccaagtaataattacactactttttattaaaaacgtacttattttggttgcttaa 31069670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 31494055 - 31494117
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacc 193  Q
    |||| ||||| |||| ||||||| |  |||| ||||||||||||||||||||| |||||||||    
T  31494055 ttttaatcaaataatgattacacaattttttcataaaaacttacttgttttggatgtttaacc 31494117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 42163655 - 42163724
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||| || |||||||||||||| ||| |||| ||||||||||||||  ||||| ||| |||||||||||    
T  42163655 actttttattaagtaataattacattactttttaataaaaacttacttcatttgg-tgtgtaaccaatgcc 42163724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 44291278 - 44291347
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    |||||| || |||||||||||||| ||| |||| ||||| |||||||| |||||| || ||||||||||||    
T  44291278 actttttattaagtaataattacattactttttaataaatacttacttcttttgg-tgcttaaccaatgcc 44291347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 6785841 - 6785910
Alignment:
Q  128 tacttttgatcaagtaataattacactaccttttt-ataaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||||||||||||||| |||||||  | ||||| || ||||||| |||||||| | ||||||||||||    
T  6785841 tacttttgatcaagtaatgattacacatcttttttcatgaaaacttgcttgtttttgatgtttaaccaat 6785910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 26613115 - 26613180
Alignment:
Q  131 ttttgatcaagtaataattacactaccttttt-ataaaaacttacttgttttggttgtttaaccaa 195  Q
    |||| |||||||||||||||||  || ||||| || |||||||||||||||||| || ||||||||    
T  26613115 ttttaatcaagtaataattacataactttttttatgaaaacttacttgttttggatgcttaaccaa 26613180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 40491240 - 40491320
Alignment:
Q  117 atgtaagtttatacttttgatcaagtaataattacactacctttttataaaaact-tacttgttttggttgtttaaccaatg 197  Q
    |||||||||  ||||||| |||| |||||||||||| ||  |||| ||||||| | || |||||||||||||||||||||||    
T  40491240 atgtaagttgttacttttcatcatgtaataattacattatatttt-ataaaaaatatatttgttttggttgtttaaccaatg 40491320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 4128743 - 4128811
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 199  Q
    ||||||| ||||||| ||||||| |  |||| || |||||||||||||||||| || ||||||| ||||    
T  4128743 ttttgataaagtaatgattacacaatattttcatgaaaacttacttgttttggatgcttaaccattgcc 4128811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 25958075 - 25958131
Alignment:
Q  97 ataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 153  Q
    |||||||||||||||||||||| |||| |  |||||||||| ||||||  |||||||    
T  25958075 ataaaaaatttgtcttaaaaatataagatgttacttttgataaagtaacgattacac 25958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 28709613 - 28709681
Alignment:
Q  128 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||||||||||| |||| |||| || || |||||||| |||||||||| |||||  || |||||||||    
T  28709613 tacttttgatcaaataatgattatacaacttttttatagaaacttacttattttgaatgcttaaccaat 28709681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 40843124 - 40843060
Alignment:
Q  132 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    ||||||||||||||||||| | ||| ||||  |||||| ||| || |||| ||||||||||||||    
T  40843124 tttgatcaagtaataattatattactttttattaaaaatttatttattttagttgtttaaccaat 40843060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 50958923 - 50958871
Alignment:
Q  131 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttgg 183  Q
    ||||||||||| ||| ||||||| |  |||| |||||||||||||||||||||    
T  50958923 ttttgatcaagaaatgattacacaattttttcataaaaacttacttgttttgg 50958871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 22472 - 22543
Alignment:
Q  129 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctc 201  Q
    |||||| ||||| ||||||||||| |||  ||| |||||||||||||| |||||| || ||||||||||||||    
T  22472 actttttatcaaataataattacattactctttaataaaaacttacttcttttgg-tgcttaaccaatgcctc 22543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 31504 - 31466
Alignment:
Q  158 tttttataaaaacttacttgttttggttgtttaaccaat 196  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  31504 tttttataaaaagttacttgttttggttgcttaaccaat 31466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University