View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1202_low_22 (Length: 482)
Name: NF1202_low_22
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 102 - 283
Target Start/End: Complemental strand, 13230861 - 13230675
Alignment:
| Q |
102 |
acacaaacaacgttcaggtacaaatgaagtgaaacattttttaacttat----atatgaagactcaattatacgtcaacatttaaaaacaatttaatttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| || |
|
|
| T |
13230861 |
acacaaacaacgttcaggtacaaatgaagtgaaacattttttaacttatatatatatgaagagtcaattatacgtcaacatttaaaagcaatttaatctt |
13230762 |
T |
|
| Q |
198 |
tggattatacaacatat--gaatcaagttttttaatttaaatattattctgaacattgtattcatttcaatattttaataagttcata |
283 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||| |
|
|
| T |
13230761 |
tggattatgcaacatatagtaatccagttttttaatttaaatattattctaaatattgtattcatttcaata-tttaataagttcata |
13230675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 293 - 450
Target Start/End: Complemental strand, 13230601 - 13230443
Alignment:
| Q |
293 |
aaattcagatatgatagttggaccttatagtgggaccttatgcccaaatttgatcagggagatttcttta-ggacctgtcggggttacctattttatatt |
391 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||| | |||||| |||||||||| || |||| |||||||||||||| ||| ||| |
|
|
| T |
13230601 |
aaattcagatatgatatttggaccttatggtgggaccttatgcccgagtttgatggaggagatttctgtagggactggtcggggttacctaatttttatg |
13230502 |
T |
|
| Q |
392 |
ttctgtaatttttgctttttattgaggatttggtttggctcccctcttgtacatatttt |
450 |
Q |
| |
|
|| |||||||||||||| |||||||| ||| ||||||| |||||||| ||||| |||| |
|
|
| T |
13230501 |
tttcgtaatttttgctttctattgagggttttgtttggcccccctcttatacatttttt |
13230443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 14783972 - 14784070
Alignment:
| Q |
353 |
gatttctttaggacctg-tcggggttacctattttatattttctgtaatttttgctttttattgaggatttggtttggctcccctcttgtacatatttt |
450 |
Q |
| |
|
|||||||||||| ||| || |||||||| | ||| | |||| ||||||||||||||| ||| |||| |||||| |||| ||||||||||||| ||||| |
|
|
| T |
14783972 |
gatttctttagggactggtcagggttaccaaatttttgttttttgtaatttttgctttctatcgagggtttggtctggcccccctcttgtacaaatttt |
14784070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 450
Target Start/End: Original strand, 10183100 - 10183177
Alignment:
| Q |
373 |
gggttacctattttatattttctgtaatttttgctttttattgaggatttggtttggctcccctcttgtacatatttt |
450 |
Q |
| |
|
|||||||||| ||| ||||| |||||||| | ||| | |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
10183100 |
gggttacctaatttgcgttttccgtaattttcgttttcttttgagggtttggtttggcccccctcttgtacatatttt |
10183177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 450
Target Start/End: Complemental strand, 16175957 - 16175920
Alignment:
| Q |
413 |
ttgaggatttggtttggctcccctcttgtacatatttt |
450 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
16175957 |
ttgagggtttggtttggcccccctcttgtacatatttt |
16175920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University