View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_24 (Length: 470)
Name: NF1202_low_24
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_24 |
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| [»] scaffold0329 (2 HSPs) |
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Alignment Details
Target: scaffold0329 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 260 - 443
Target Start/End: Complemental strand, 7929 - 7746
Alignment:
| Q |
260 |
tatttatatgtgtctgcttgtttttctgctacggtttttggttcgcaatttgtttaatttttgttcctgtacttatatttgtcagattccataacaccta |
359 |
Q |
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| T |
7929 |
tatttatttgtgtctgcttgtttttctgctacggtttttggttcgcaatttgttttatttttgttcctgtacttatatttgtcagattccataacaccta |
7830 |
T |
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| Q |
360 |
caggatgttcttgtcattttattatataattcttgatacaatatcgtgtaatcttattttcttatagattctaagaataatttg |
443 |
Q |
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| T |
7829 |
gaggatgttcttgtcattttattatataattcttgatacaatatcgtgtaatcttattttcttatagattctaagaatagtttg |
7746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 7990 - 7925
Alignment:
| Q |
17 |
tatatggatagggacaaagctgtagtttggtcgtttgaatttgaagtatatacaattggtatattt |
82 |
Q |
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| T |
7990 |
tatatgggtagggacaaagctgtagtttggtcgtttgaatttgaagtatatacagttggtatattt |
7925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 442
Target Start/End: Original strand, 14263303 - 14263363
Alignment:
| Q |
382 |
tatataattcttgatacaatatcgtgtaatcttattttcttatagattctaagaataattt |
442 |
Q |
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| T |
14263303 |
tatataattcttgatacaatctcgtattattttatcttcttttagattctcggaataattt |
14263363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 442
Target Start/End: Original strand, 14252704 - 14252764
Alignment:
| Q |
382 |
tatataattcttgatacaatatcgtgtaatcttattttcttatagattctaagaataattt |
442 |
Q |
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| T |
14252704 |
tatataattcttgatacaatctcgtattattttatcttcttttagattctcggaataattt |
14252764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 442
Target Start/End: Original strand, 18345288 - 18345348
Alignment:
| Q |
382 |
tatataattcttgatacaatatcgtgtaatcttattttcttatagattctaagaataattt |
442 |
Q |
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| T |
18345288 |
tatataattcttgatacaatctcgtattattttatcttcttttagattctcggaataattt |
18345348 |
T |
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