View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_27 (Length: 455)
Name: NF1202_low_27
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 92 - 383
Target Start/End: Original strand, 2258303 - 2258592
Alignment:
| Q |
92 |
aggagcttatagataaacacaattcatataagtgtttgtgtataagttatgagctattttcataaactatatatatatccttgggagcttnnnnnnntaa |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
2258303 |
aggagcttatagataaacacaattcatataagtgtttgtgtataagttatgagctattttcataaactatatatat--ccttgggagcttaaaaaaataa |
2258400 |
T |
|
| Q |
192 |
gctgacaatgtcaataacttgtggacatgtcagaagctatttgcataaacactctctcacacaatattagaagtatttttgttagtagaaaatctcaaat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2258401 |
gctgacaatgtcaataacttgtggacatgtcagaagctatttgcataaacactctctcacacaatattagaagtatttttgttagtagaaaatctcaaat |
2258500 |
T |
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| Q |
292 |
aagttaatccaaacaagctatatatatcatgttaaatttatgtttttgtgctttctttttaaaatcaaatttattttcaatatttagaataa |
383 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2258501 |
aagttaatccaaacaggctatatatatcatgttaaatttatgtttttgtgctttctttttaaaatcaaatttattttcaatatttagaataa |
2258592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 25659839 - 25659805
Alignment:
| Q |
271 |
tgttagtagaaaatctcaaataagttaatccaaac |
305 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
25659839 |
tgttagtagataatctcaaataagttaatccaaac |
25659805 |
T |
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