View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_30 (Length: 440)
Name: NF1202_low_30
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 106 - 429
Target Start/End: Original strand, 11832315 - 11832638
Alignment:
| Q |
106 |
tagtctttctatcatttggcttatcccttcagatatggagcagtatgttgtttatttttagctttgttggtttgttatggtgggttatattcttcctaac |
205 |
Q |
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| T |
11832315 |
tagtctttctatcatttggcttatcccttcagatatggagcagtatgttgtttatttttagctttgttggtttgttatggtgggttatattcttcctaac |
11832414 |
T |
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| Q |
206 |
cttttgtgaagctggctgtaatgaaaactactgtctgctattttttaggctaaacgtgataattgaaaaacatcnnnnnnnaggaaataatgacattatt |
305 |
Q |
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| T |
11832415 |
cttttgtgaagctggctgtaatgaaaactactgtctgctattttttaggcaaaacgtgataattgaaaaacatc-ttttttaggaaataatgatattatt |
11832513 |
T |
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| Q |
306 |
gactttattcnnnnnnnaaacag-nnnnnnnnnnnnnngatggcaataattggctggcatgaggaattaacaacacagtttcccatttactttatttgtc |
404 |
Q |
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| T |
11832514 |
gactttattctttttttaaacagaaaaaaaacagaaaagatggcaataattggctggcatgaggaattaacaacacagtttcccatttacattatttgtc |
11832613 |
T |
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| Q |
405 |
cacaacaaagtacttggcccttcat |
429 |
Q |
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||| ||| ||||||||||||||||| |
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| T |
11832614 |
cactacacagtacttggcccttcat |
11832638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 11821861 - 11821984
Alignment:
| Q |
106 |
tagtctttctatcatttggcttatcccttcagatatggagcagtatgttgtttatttttagctttgttggtttgttatggtgggttatattcttcctaac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11821861 |
tagtctttctatcatttggcttatcccttcagatatggagcagtatgttgtttatttttagctttgttggtttgttatggtgggttatattcttcctaac |
11821960 |
T |
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| Q |
206 |
cttttgtgaagctggctgtaatga |
229 |
Q |
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| T |
11821961 |
cttttgtgaagctggctgtaatga |
11821984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 11817462 - 11817555
Alignment:
| Q |
106 |
tagtctttctatcatttggcttatcccttcagatatggagcagtatgttgtttatttttagctttgttggtttgttatggtgggttatattctt |
199 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |
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| T |
11817462 |
tagtctttctatcatttggcttatcctttcagatatggagctgtatgttgtttatctttacctttgttggtttgttttggtgggttatattctt |
11817555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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