View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_32 (Length: 417)
Name: NF1202_low_32
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 53 - 409
Target Start/End: Complemental strand, 28184380 - 28184024
Alignment:
| Q |
53 |
gctagggcttcttattgctctgagttacaatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaacacaaccaagacgttaactctttgg |
152 |
Q |
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| T |
28184380 |
gctatggcttcttattgctccgagttacaatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaacacaaccaagacgttaactctttgg |
28184281 |
T |
|
| Q |
153 |
gtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctttgccaagcaattgacttgaggca |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184280 |
gtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctttgccaagcaattgacttgaggca |
28184181 |
T |
|
| Q |
253 |
tttggaagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaatggagaacttcatccttcaaga |
352 |
Q |
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| T |
28184180 |
tttggaagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaatggagaacttcatccttcaaga |
28184081 |
T |
|
| Q |
353 |
ttttgcgagaaagatttgctcaaagttgtcgacagggagtatgtgtttgcctatgct |
409 |
Q |
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| T |
28184080 |
ttttgcgagaaagatttgctcaaagttgtcgacagggagtatgtgtttgcctatgct |
28184024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 42609739 - 42609660
Alignment:
| Q |
80 |
caatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaacacaaccaagacgttaactctttgggtttgat |
159 |
Q |
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| T |
42609739 |
caataccttgctagtcctgtcaccactcatgtccaaagtgctgaacaacataaccaagatgttaactctttaggcttgat |
42609660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 42609542 - 42609438
Alignment:
| Q |
277 |
tgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaatggagaacttcatccttcaagattttgcgagaaagatttgctcaaa |
376 |
Q |
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|||||||||||||||||| ||||| || ||||||| || ||| ||||||||||| || | ||||| ||||| ||||| ||||| ||||| ||||| |
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| T |
42609542 |
tgtcaagaacactgtaagtcaagtagccaagagaattctaacagttggtgtcaatggtgagttgcatccatcaaggttttgtgagaaggatttactcaat |
42609443 |
T |
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| Q |
377 |
gttgt |
381 |
Q |
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||||| |
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| T |
42609442 |
gttgt |
42609438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 58 - 366
Target Start/End: Original strand, 40945044 - 40945352
Alignment:
| Q |
58 |
ggcttcttattgctctgagttacaatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaacacaaccaagacgttaactctttgggtttg |
157 |
Q |
| |
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|||||| ||||| |||||||| ||||||||||| || || || || ||||| || |||||||| ||||| ||||||||||| || ||||||||||||||| |
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| T |
40945044 |
ggcttcctattgttctgagttgcaatatcttgcaaatccggttacaacccacgtccaaagtgccgagcagcacaaccaagatgtgaactctttgggtttg |
40945143 |
T |
|
| Q |
158 |
atttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctttgccaagcaattgacttgaggcatttgg |
257 |
Q |
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|||||||| ||||||||| | || || ||||||||| | | |||||||||||||| |||||||| || ||||||||||||||||| || || ||||||| |
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| T |
40945144 |
atttcttcgagaaaaacatatgaagccattgagatccttcaactcatgtcttccacattcttgattgctctttgccaagcaattgatttaagacatttgg |
40945243 |
T |
|
| Q |
258 |
aagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaatggagaacttcatccttcaagattttg |
357 |
Q |
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| T |
40945244 |
aggagaacttgaaaaactcagtcaagaacaccgtaagtcaagtcgccaaaaagacccttaccataggcgtgaatggagaacttcatccttcaagattttg |
40945343 |
T |
|
| Q |
358 |
cgagaaaga |
366 |
Q |
| |
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|| ||||| |
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| T |
40945344 |
tgaaaaaga |
40945352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 58 - 354
Target Start/End: Original strand, 40959009 - 40959305
Alignment:
| Q |
58 |
ggcttcttattgctctgagttacaatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaacacaaccaagacgttaactctttgggtttg |
157 |
Q |
| |
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|||||| ||||| |||||||| ||||||||||| || || || || ||||| || |||||||| ||||| ||||||||||| || ||||||||||||||| |
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| T |
40959009 |
ggcttcctattgttctgagttgcaatatcttgcaaatccggttacaacccacgtccaaagtgccgagcagcacaaccaagatgtgaactctttgggtttg |
40959108 |
T |
|
| Q |
158 |
atttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctttgccaagcaattgacttgaggcatttgg |
257 |
Q |
| |
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||||| || ||||||||| | || || ||||||||| | | |||||||||||||| |||||||| || ||||||||||||||||| || || ||||||| |
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| T |
40959109 |
atttcatcaagaaaaacatatgaagccattgagatccttcaactcatgtcttccacattcttgattgcactttgccaagcaattgatttaagacatttgg |
40959208 |
T |
|
| Q |
258 |
aagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaatggagaacttcatccttcaagatt |
354 |
Q |
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| T |
40959209 |
aggagaacttgaaaaactcagtcaagaacaccgtaagtcaagtagccaaaaagacccttaccataggagtaaatggagaacttcaaccttcaagatt |
40959305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 107 - 295
Target Start/End: Original strand, 43216840 - 43217028
Alignment:
| Q |
107 |
catgtgcaaagtgctgagcaacacaaccaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgt |
206 |
Q |
| |
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|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||| ||| |||||| || || |||||||| || |||||||||| |
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| T |
43216840 |
catgtgcaaagtgctgagcagcacaaccaagatgtgaactctttggggttgatttctgctatgaaaacagtggaagccattgagatattgaagctcatgt |
43216939 |
T |
|
| Q |
207 |
cttccactttcttgatcgcgctttgccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagc |
295 |
Q |
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| T |
43216940 |
cttccacatatttggttgcactctgccaagctattgacttgaggcatttggaggaaattttcaagaactctgtcaagaaaactgtaagc |
43217028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 8929115 - 8929158
Alignment:
| Q |
7 |
attttaaatagaaaattatttgaaaacccaactaagagttgcaa |
50 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8929115 |
attttaaatagaaaattatttgaaaacccaactaagagttgcaa |
8929158 |
T |
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