View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1202_low_34 (Length: 380)
Name: NF1202_low_34
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 33019696 - 33019356
Alignment:
| Q |
11 |
cagagagcattggggaatcaaagagaactaacttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgtttttt |
110 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33019696 |
cagagggcattggggaatcaaagagaactaactcgtctaagtcgttgcgagagcttagcatgagacgatggcgagtgtttgacatgcaaagatgtttttt |
33019597 |
T |
|
| Q |
111 |
agcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatg |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33019596 |
agcaaattttggatcagaaactaatgaattgactgacttgcagaggcatcgaagttgaataaggatttttaccgggagtctgcatagaatttcagcgatg |
33019497 |
T |
|
| Q |
211 |
agatcgaatggaagagtgggtagtggcggagttgttgttgttagggttccggtggaggtaagagtgagttgatgcgtctttgttacgattgtttcctcca |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33019496 |
agatcgaatggaagagtgggtagtggcggagttgttgttgttagggttccggtgaaggtaagagtgagttgatgcgtctttgttacgattgtttcctcca |
33019397 |
T |
|
| Q |
311 |
tgagtgatgaaaaaggaagaggataaaaggggagggagagg |
351 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33019396 |
tgagtgatgaaaaaggaagaggataaaaggggagggagagg |
33019356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 33026093 - 33025815
Alignment:
| Q |
11 |
cagagagcattggggaatcaaagagaactaacttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgtttttt |
110 |
Q |
| |
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||||| |||| |||||||||||||||||||||| |||||| |||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||| |
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|
| T |
33026093 |
cagagggcatcggggaatcaaagagaactaactcgtctaactcgttggtagagcttagcatgagacggtggtgcgtgtttgacatgcgaagatgttttta |
33025994 |
T |
|
| Q |
111 |
agcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatg |
210 |
Q |
| |
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||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33025993 |
agcgaattt-ggatcagaaactaacgaattgaatgacttgcataggcatcgaagttgaatgaggagttttaccgggagtctgcatagaatttcagcgatg |
33025895 |
T |
|
| Q |
211 |
agatcgaatggaagagtgggtagtggcggagttgttgttgttagggttccggtggaggtaagagtgagttgatgcgtctt |
290 |
Q |
| |
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||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33025894 |
agatcgaatggaagagtaggtagtggatgagcggttgtagttagggttccggtggaggtaagagtgagttgatgcgtctt |
33025815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 33037590 - 33037364
Alignment:
| Q |
11 |
cagagagcattggggaatcaaagagaactaacttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgtttttt |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| | ||| | ||||||||||||| ||||||||| || |
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|
| T |
33037590 |
cagagggcattggggaatcaaagagaactaactcgtctaagtcgttattagagcttaacatgagatggtggcgcgtgtttgacatgcgaagatgtttctt |
33037491 |
T |
|
| Q |
111 |
agcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatg |
210 |
Q |
| |
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||| ||||| |||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |
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| T |
33037490 |
agcgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcatagaatttcagcgacg |
33037391 |
T |
|
| Q |
211 |
agatcgaatggaagagtgggtagtggc |
237 |
Q |
| |
|
||||| || |||||||||||||||||| |
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|
| T |
33037390 |
agatcaaacggaagagtgggtagtggc |
33037364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 318
Target Start/End: Complemental strand, 33023552 - 33023377
Alignment:
| Q |
136 |
gaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtg |
235 |
Q |
| |
|
|||||||| |||||||| || ||| ||||||||| ||||| ||| || |||| ||| || || |||||||| | |||||| ||||||||||| | ||||| |
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|
| T |
33023552 |
gaattgaaggacttgcaaagacattgaagttgaaggaggagtttcacagggattctacaaaggatttcagcaaggagatcaaatggaagagttgttagtg |
33023453 |
T |
|
| Q |
236 |
gcggagttgttgttgttagggttccggtggaggtaagagtgagttgatgcgtctttgttacgattgtttcctccatgagtgat |
318 |
Q |
| |
|
|||||| | ||||||||| |||| ||||||| ||| ||| || |||||||| |||||||||||||||||||||| |
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|
| T |
33023452 |
gcggagcggatgttgttagagttc-------ggtaagaatgaattgttgtatctttgttgtgattgtttcctccatgagtgat |
33023377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 264
Target Start/End: Complemental strand, 27755003 - 27754828
Alignment:
| Q |
89 |
ttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggag |
188 |
Q |
| |
|
|||||| || ||| ||||| || |||||||||||||| || | ||| ||||| || ||||| |||||||||| |||||||| || | || || || || |
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|
| T |
27755003 |
ttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaattaaaggacttacagaggcatcaaagttgaagtagtaacttcacgggaag |
27754904 |
T |
|
| Q |
189 |
tctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcggagttgttgttgttagggttccggtg |
264 |
Q |
| |
|
|||| ||||| || ||||||||||||||| ||||||||| |||||||||| | || |||||||||| ||||| |
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|
| T |
27754903 |
catgcacagaatctcttcgatgagatcgaatgtaagagtgggaagtggcggaggagatgatgttagggtttcggtg |
27754828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 7443711 - 7443820
Alignment:
| Q |
121 |
ggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatg |
220 |
Q |
| |
|
|||||||||| ||| |||||||| |||| |||||||| |||||||| ||||| | ||| || || || ||||| ||||| |||| || ||||||||| | |
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|
| T |
7443711 |
ggatcagaaattaaagaattgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagg |
7443810 |
T |
|
| Q |
221 |
gaagagtggg |
230 |
Q |
| |
|
|||||||||| |
|
|
| T |
7443811 |
gaagagtggg |
7443820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 12217388 - 12217241
Alignment:
| Q |
89 |
ttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggag |
188 |
Q |
| |
|
|||||| || ||||||||| | |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| |||||||| | |||||||| | |
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|
| T |
12217388 |
ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaat |
12217289 |
T |
|
| Q |
189 |
tctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtgg |
236 |
Q |
| |
|
||| || | |||||| || | ||||| || ||||| ||||||||||| |
|
|
| T |
12217288 |
tctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtgg |
12217241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 9566517 - 9566582
Alignment:
| Q |
99 |
aagatgttttttagcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaag |
164 |
Q |
| |
|
|||||||||||| || |||||||||||||||| | |||||||| |||||||||||||| ||||| |
|
|
| T |
9566517 |
aagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaag |
9566582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 7428315 - 7428439
Alignment:
| Q |
112 |
gcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatga |
211 |
Q |
| |
|
|||||||| |||||||| | ||| |||||||| |||| |||||||| ||||| |||||||| | |||||||| | ||| || | |||||| || | | |
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|
| T |
7428315 |
gcaaatttgggatcagagattaaagaattgaagcacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaa |
7428414 |
T |
|
| Q |
212 |
gatcgaatggaagagtgggtagtgg |
236 |
Q |
| |
|
|||| || ||||| ||||||||||| |
|
|
| T |
7428415 |
gatcaaacggaagcgtgggtagtgg |
7428439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 37754091 - 37754191
Alignment:
| Q |
139 |
ttgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcg |
238 |
Q |
| |
|
||||| ||||| |||||||| || ||||| | ||| | || || |||||||||||||||||||| |||| | ||||| ||||||||||| ||||||| |
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|
| T |
37754091 |
ttgaaggacttacagaggcaccggagttgtaagagtaacttgacagggagtctgcatagaatttctgcgaccaattcgaaaggaagagtgggcagtggcg |
37754190 |
T |
|
| Q |
239 |
g |
239 |
Q |
| |
|
| |
|
|
| T |
37754191 |
g |
37754191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 24418089 - 24418235
Alignment:
| Q |
23 |
gggaatcaaagagaactaacttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgttttttagcaaattttgg |
122 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||| ||| ||| |||||| |||||| | || |||||| || ||| || || || || ||||| || |
|
|
| T |
24418089 |
gggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttggg |
24418188 |
T |
|
| Q |
123 |
atcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaa |
169 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
24418189 |
atcagagattaatgaattgaaggacttgcagagacagcgaagttgaa |
24418235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 25869469 - 25869541
Alignment:
| Q |
143 |
atgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatc |
215 |
Q |
| |
|
|||||||||| | ||| || ||||| ||||||| ||| | |||| ||||||||| ||||||||||||||||| |
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|
| T |
25869469 |
atgacttgcaaatgcagcggagttgcatgaggaatttgatggggaatctgcataggatttcagcgatgagatc |
25869541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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