View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_35 (Length: 360)
Name: NF1202_low_35
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 85 - 266
Target Start/End: Original strand, 6203944 - 6204125
Alignment:
| Q |
85 |
atagggttttcgagtcggatttgtggtgtggtggtggatcgaggaccgttggatctgcgggatcggagaagttctaaggcttggctgcgtgcggtggcgt |
184 |
Q |
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| T |
6203944 |
atagggttttcgagtcggatttgtggtgtggtggtggatcgaggaccgttggatctgcgggatcggagaagttctaaggcttggctgcgtgcggtggcgt |
6204043 |
T |
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| Q |
185 |
cagggcctcgagttggtcttcgcttcctgcttgaaccgtcgtcgtccgccattgctgtctctcactctctctaactaacttc |
266 |
Q |
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| T |
6204044 |
cagggcctcgagttggtcttcgcttcctgcttgaaccgtcgtcgtccgccattgctgtctctcactctctctaactaacttc |
6204125 |
T |
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