View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1202_low_38 (Length: 359)

Name: NF1202_low_38
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1202_low_38
NF1202_low_38
[»] chr2 (8 HSPs)
chr2 (91-352)||(33021023-33021284)
chr2 (91-345)||(33038929-33039183)
chr2 (1-93)||(33019674-33019766)
chr2 (234-347)||(33027433-33027546)
chr2 (1-93)||(33026071-33026163)
chr2 (1-93)||(33037568-33037660)
chr2 (97-187)||(33027356-33027445)
chr2 (30-87)||(33023684-33023741)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 91 - 352
Target Start/End: Original strand, 33021023 - 33021284
Alignment:
Q  91 ttcatcgtggttacgacatgtggaataatgtgatgacaaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgttgtt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33021023 ttcatcgtggttacgacatgtggaataatgtgatgacaaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgttgtt 33021122  T
Q  191 atatgattgccttctgtttctacataatttcatgtattatgtcagagtctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctata 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33021123 atatgattgccttctgtttctacataatttcatgtattatgtcagagcctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctata 33021222  T
Q  291 agagcctcttgatttgattgtgtttttactatcaagtaacgtaagattttatatattcttcg 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33021223 agagcctcttgatttgattgtgtttttactatcaagtaacgtaagattttatatattgttcg 33021284  T

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Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 91 - 345
Target Start/End: Original strand, 33038929 - 33039183
Alignment:
Q  91 ttcatcgtggttacgacatgtggaataatgtgatga-caaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgttgt 189  Q
    ||||||||||||||||||||||||||| |||||  | |||||||| || ||| ||| ||||||||| |||||||||||||||||||||||||||||||||    
T  33038929 ttcatcgtggttacgacatgtggaata-tgtgaccaacaaggtaagttatggttcttggaaacctcgcttaattgatgattattaagagcctcttgttgt 33039027  T
Q  190 tatatgattgccttctgtttctacataatttcatgtattatgtcagagtctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctat 289  Q
     |||||||| |||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  33039028 catatgatttccttctgtttgtacataattgcatgtattatgttagagcctcttgttgtcattcaaagaaaacacaagtaaagaaagaaaatttatctat 33039127  T
Q  290 aagagcctcttgatttgattgtgtttttactatcaagtaacgtaagattttatata 345  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  33039128 aagagcctcttgatttgattgtgtttttactatcaagtaacctaagattttgtata 33039183  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 33019674 - 33019766
Alignment:
Q  1 ctttgattccccaatgctctctgattttccaacgtttactgtcaaacaaacacaagtcagttaccctgattgtctcaaaattgaatatgattc 93  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33019674 ctttgattccccaatgccctctgattttccaacgtttactgtcaaacaaacacaagtcagttaccctgattgtctcaaaattgaatatgattc 33019766  T

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Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 234 - 347
Target Start/End: Original strand, 33027433 - 33027546
Alignment:
Q  234 agagtctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctataagagcctcttgatttgattgtgtttttactatcaagtaacgta 333  Q
    |||| |||||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  33027433 agagcctcttgttatcattcaaagaatacacaagcaaataaagaaaatttatctataagagcctcttgatttgattgtgcttttactatcaagtaaccta 33027532  T
Q  334 agattttatatatt 347  Q
    ||||| | ||||||    
T  33027533 agattctgtatatt 33027546  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 33026071 - 33026163
Alignment:
Q  1 ctttgattccccaatgctctctgattttccaacgtttactgtcaaacaaacacaagtcagttaccctgattgtctcaaaattgaatatgattc 93  Q
    |||||||||||| |||| |||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  33026071 ctttgattccccgatgccctctgattttccaacgtttactatcaaccaaacacaactcagttaccctgattgtctcaaaattgaatatgattc 33026163  T

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Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 33037568 - 33037660
Alignment:
Q  1 ctttgattccccaatgctctctgattttccaacgtttactgtcaaacaaacacaagtcagttaccctgattgtctcaaaattgaatatgattc 93  Q
    ||||||||||||||||| |||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||||    
T  33037568 ctttgattccccaatgccctctgattttccaacgtttactgtaaaccagacacaactcagttaccctgattgtctcaaaattgaatatgattc 33037660  T

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Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 33027356 - 33027445
Alignment:
Q  97 gtggttacgacatgtggaataatgtgatgacaaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgtt 187  Q
    ||||||||| ||||  ||||| |||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33027356 gtggttacggcatgaagaata-tgtgataacaaggtaaattatggatctcggaaacctctcttaattaatgattattaagagcctcttgtt 33027445  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 33023684 - 33023741
Alignment:
Q  30 caacgtttactgtcaaacaaacacaagtcagttaccctgattgtctcaaaattgaata 87  Q
    ||||||||||| |||  ||||||||  ||||||||||| |||||||||||||||||||    
T  33023684 caacgtttactatcacgcaaacacagctcagttaccctaattgtctcaaaattgaata 33023741  T

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