View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_39 (Length: 349)
Name: NF1202_low_39
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_39 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 43366380 - 43366582
Alignment:
| Q |
143 |
cactggttgcgattaacaagtatcggtccggatgagttttgctattagcctctgcaacaattagaaatataaataaatacactcaatcaaaattaaattg |
242 |
Q |
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| T |
43366380 |
cactggttgcgattaacaagtatcggtccggatgagttttgctattagcctctgcaacaattagaaatataaataaatacactcaatcaaaattaaattg |
43366479 |
T |
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| Q |
243 |
atgagatgaaaaaaggactagctaggagtctaggatgaagtttacttgcaaagttgacaccggcattactgcaggcagagaaaagctgcgagttcctcga |
342 |
Q |
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| T |
43366480 |
atgagatgaaaaaagga----ctaggagtctaggatgaagtttacttgcaaagttgacaccggcataactgcaggcagagaaaagctgcgagttcctcga |
43366575 |
T |
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| Q |
343 |
attccat |
349 |
Q |
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| T |
43366576 |
attccat |
43366582 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 53491258 - 53491223
Alignment:
| Q |
98 |
agataccaaataaatcacttcaatttttcacaggtt |
133 |
Q |
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| T |
53491258 |
agataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
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