View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1202_low_4 (Length: 808)

Name: NF1202_low_4
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1202_low_4
NF1202_low_4
[»] chr2 (1 HSPs)
chr2 (97-799)||(4861330-4862033)


Alignment Details
Target: chr2 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 97 - 799
Target Start/End: Complemental strand, 4862033 - 4861330
Alignment:
Q  97 caagtctgacttgatttagaatcatatttatgaataagtacaattagtccactaatcgggttagttgtggccacagtgatcaatattcatacttagtgag 196  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4862033 caagtctgacttgatttagaatcatatttatgaataagcacaattagtccactaatcgggttagttgtggccacagtgatcaatattcatgcttagtgag 4861934  T
Q  197 taaaggatatatttttctttcgataaataaacagtttattgattgaggtatctctactatgaacttttaaaagaaggtttaaagttagaaaataaagtca 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4861933 taaaggatatatttttctttcgataaataaacagtttattgattgaggtatctctactatgaactcttaaaagaaggtttaaagttagaaaataaagtca 4861834  T
Q  297 atatgnnnnnnnnnnnnaggtcaatattagacaccttattgattcatgagtggagcacaaataagtgagcaaaggggattgctagattattttgtcagtg 396  Q
    |||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4861833 atatgtatatatatataaggtcaatattagacaccttattgattcatgagtggagcacaaataagtgagcaaaggggattgatagattattttgtcagtg 4861734  T
Q  397 tatgatatttggcatcttctttttaatttcctagccatacgtaccaaggttatagacccacttctgaatttgtttcgtgtacgtacgtacgtacgtggtt 496  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4861733 catgatatttggcatcttctttttaatttcctagccatacgtaccaaggttatagacccacttctgaatttgtttcgtgtacgtacgtacgtacgtggtt 4861634  T
Q  497 -gttactatagttttgatacatcatagatatgaatagggatggaatttacattttcttaattacaaattgcatataattaaaaattgagaagacgcacgg 595  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4861633 tgttactatagttttgatacatcatagatatgaatagggatggaatttacattttcttaatgacaaattgcatataattaaaaattgagaagacgcacgg 4861534  T
Q  596 atactcaattacagaatatatgaaagagaaagaaaaacgagacgtacggacaagagatgggtagaggaaacacaacaaaagatatagacaaaactttcat 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4861533 atactcaattacagaatatatgaaagagaaagaaaaacgagacgtacggacaagagatgggtagaggaaacacaacaaaagatatagacaaaactttcat 4861434  T
Q  696 attagtgttaaaagtattggtatatcaattgagtaagagtcccacgttagaagnnnnnnntgattgttaaacacattatatgtgaaatgagttataagta 795  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||| |||||||||    
T  4861433 attagtgttaaaagtatttgtatatcaattgagtaagagtctcacgttagaagaaaaaaatgattgttaaacacattatatgtgaaatgacttataagta 4861334  T
Q  796 taat 799  Q
    ||||    
T  4861333 taat 4861330  T

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