View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_45 (Length: 321)
Name: NF1202_low_45
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 90 - 285
Target Start/End: Original strand, 21619161 - 21619355
Alignment:
| Q |
90 |
tattatttatctttatgcattgattatcctatgccttctaattgtttattataactacaaatcaatccaaaagaaaagagtatgatgatggtaggatagg |
189 |
Q |
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| T |
21619161 |
tattatttatctttatgcgttgattatcctatgccttctaattgtttattaccacaacaaatccatccaaaggaaaaaagtatga---tggtaggatagg |
21619257 |
T |
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| Q |
190 |
atggatcaatcatccacatatacaatagtaatgtaaaggtattggggtctaactgtttgattaaattactcaagagc--ataaatggacaaaatccaa |
285 |
Q |
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| T |
21619258 |
atggatcaatcatccaaatatacaatagtaatgtgaaggtattggggtctatctatttgattaaactattcaaaagcatataaaaggacaaaatccaa |
21619355 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 8733571 - 8733519
Alignment:
| Q |
30 |
caaataatataaatttttctttaaaaatgttagagaatttctctattttctct |
82 |
Q |
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| T |
8733571 |
caaataatataatcttttctttgagaatattagagagtttctctattttctct |
8733519 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 22601011 - 22601063
Alignment:
| Q |
30 |
caaataatataaatttttctttaaaaatgttagagaatttctctattttctct |
82 |
Q |
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| T |
22601011 |
caaataatataatcttttctttgagaatattagagagtttctctattttctct |
22601063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 37215562 - 37215614
Alignment:
| Q |
30 |
caaataatataaatttttctttaaaaatgttagagaatttctctattttctct |
82 |
Q |
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| T |
37215562 |
caaataatataatcttttctttgagaatattagagagtttctctattttctct |
37215614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 2403911 - 2403859
Alignment:
| Q |
30 |
caaataatataaatttttctttaaaaatgttagagaatttctctattttctct |
82 |
Q |
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|||||||||||| |||||||| | ||| ||||||| |||||||||||||||| |
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| T |
2403911 |
caaataatataatattttctttgagaatattagagagtttctctattttctct |
2403859 |
T |
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