View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1202_low_49 (Length: 309)

Name: NF1202_low_49
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1202_low_49
NF1202_low_49
[»] chr2 (1 HSPs)
chr2 (1-293)||(10306367-10306665)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 10306665 - 10306367
Alignment:
Q  1 catctatcctaagtcaggatagatacccgaaaataggaactccctgttttattaaatttaaatacaaattcaaactcctaactaacatagttttgtttct 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10306665 catctatcctaagttaggatagatacccgaaaataggaactccctgttttattatatttaaatacaaattcaaactcctaactaacatagttttgtttct 10306566  T
Q  101 ctttcctgacatacaccctacttatatggggtt------tatcagtgtgtgcagtgaaaatacctttggaatttgtgtgtacggtagcagctgactcatt 194  Q
    |||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10306565 ctttcctgacatacaccctacttatatggggttgctgcctatcagtgtgtgcagtgaaaatacctttggaatttgtgtgtatggtagcagctgactcatt 10306466  T
Q  195 tatatggagtgtggcaatgcacatttaaccttctagactgcaaaatggtgggggcccattcacggggctcccataagatcgagctaggcctgtctatga 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10306465 tatatggagtgtggcaatgcacatttaaccttctagactgcaaaatggtgggggcccattcacggggctcccataagatcgagctaggcctgtctatga 10306367  T

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