View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_50 (Length: 302)
Name: NF1202_low_50
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 48482592 - 48482474
Alignment:
| Q |
102 |
taaacaaggtacaccaaccaacaaatatgaaaaaagagtaaagagtttgagagaaaatgcagatattaccatgagagctctttcagtttgcattacctca |
201 |
Q |
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| T |
48482592 |
taaacaaggtacaccaaccaacaaatatgaaaaaagagtaaggagtttgagagaaaatgcagatattaccatgagagctctttcagtttgcattacctca |
48482493 |
T |
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| Q |
202 |
gacactccatgtggaagct |
220 |
Q |
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| T |
48482492 |
gacactccatgtggaagct |
48482474 |
T |
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