View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1202_low_51 (Length: 295)
Name: NF1202_low_51
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_51 |
 | |
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| [»] scaffold0719 (1 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 5284444 - 5284333
Alignment:
| Q |
100 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5284444 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaactatttctgctgtagtttcacctcttatac |
5284345 |
T |
|
| Q |
200 |
tttatgcctttg |
211 |
Q |
| |
|
||||||| |||| |
|
|
| T |
5284344 |
tttatgcttttg |
5284333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 5291939 - 5291828
Alignment:
| Q |
100 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||||||| |
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|
| T |
5291939 |
gttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggttgcagtttcacctcttatac |
5291840 |
T |
|
| Q |
200 |
tttatgcctttg |
211 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
5291839 |
tctatgcttttg |
5291828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 5312371 - 5312482
Alignment:
| Q |
100 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac |
199 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |
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|
| T |
5312371 |
gttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattaatcagaactatttctgttgtagtttcacctctaatac |
5312470 |
T |
|
| Q |
200 |
tttatgcctttg |
211 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
5312471 |
tctatgcttttg |
5312482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 5305159 - 5305270
Alignment:
| Q |
100 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac |
199 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||| |
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|
| T |
5305159 |
gttctttggtctatagtaagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaactatttcggttgccatttcacctcttatac |
5305258 |
T |
|
| Q |
200 |
tttatgcctttg |
211 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
5305259 |
tctatgcttttg |
5305270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 14951259 - 14951148
Alignment:
| Q |
100 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac |
199 |
Q |
| |
|
||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||| |
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|
| T |
14951259 |
gttctttggtctatagttagatcttacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctgatac |
14951160 |
T |
|
| Q |
200 |
tttatgcctttg |
211 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
14951159 |
tctatgcttttg |
14951148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 15124408 - 15124519
Alignment:
| Q |
100 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac |
199 |
Q |
| |
|
||||||||||||||| ||||| | | | ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||| |
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|
| T |
15124408 |
gttctttggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatac |
15124507 |
T |
|
| Q |
200 |
tttatgcctttg |
211 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
15124508 |
tctatgcttttg |
15124519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 31527941 - 31527830
Alignment:
| Q |
100 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac |
199 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| |||||||||||||||||||||| |||||| || | ||||||||||||| |||||||| |||||| || | |
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|
| T |
31527941 |
gttctttggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactactcagaactatttctgttgtagttttacctctaattc |
31527842 |
T |
|
| Q |
200 |
tttatgcctttg |
211 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
31527841 |
tctatgcttttg |
31527830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 21264026 - 21263968
Alignment:
| Q |
136 |
aacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctct |
194 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
21264026 |
aacatattaatagcattttatgaattaatcagaactatttctattgtagtttcacctct |
21263968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 21109210 - 21109152
Alignment:
| Q |
136 |
aacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| | || || |||||||||| |||||||||| |
|
|
| T |
21109210 |
aacatattaatagcattttatgcattaatcataattacttctgctgtaatttcacctct |
21109152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 21177788 - 21177723
Alignment:
| Q |
141 |
attaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatactttatgc |
206 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| |||| | ||||||||||||| ||||| ||||| |
|
|
| T |
21177788 |
attaatggcattttatgcattaatcagaactatatctgttttagtttcacctctaatactctatgc |
21177723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 21297880 - 21297826
Alignment:
| Q |
136 |
aacatattaatagcattttatgcattaataagaactatttctgctgtagtttcac |
190 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||| |||| ||||||||||| |
|
|
| T |
21297880 |
aacatattaatagcagtttatgcataaatcagaactatctctgttgtagtttcac |
21297826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 21260195 - 21260091
Alignment:
| Q |
100 |
gttctttggtctataattagaactttcttaaaa----gaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctctt |
195 |
Q |
| |
|
||||||||||||||| ||||||||| || |||| ||||||| ||||| || ||||||||||||| ||||||||| || |||||||| |||||| |
|
|
| T |
21260195 |
gttctttggtctatagttagaacttactaaaaattaagaaaacacattaaaagtattttatgcattacacagaactattgttgttgtagtttgacctcta |
21260096 |
T |
|
| Q |
196 |
atact |
200 |
Q |
| |
|
||||| |
|
|
| T |
21260095 |
atact |
21260091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 33722825 - 33722786
Alignment:
| Q |
136 |
aacatattaatagcattttatgcattaataagaactattt |
175 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
33722825 |
aacatattaatatcattttatgcattaatcagaactattt |
33722786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 5949 - 5899
Alignment:
| Q |
100 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagca |
150 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||||| |||||||| |
|
|
| T |
5949 |
gttctttggtctctagttagaactaacttaaaagaaaacataataatagca |
5899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 20022 - 19972
Alignment:
| Q |
100 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagca |
150 |
Q |
| |
|
|||||||||||| || |||||||| | ||||||||||||||| |||||||| |
|
|
| T |
20022 |
gttctttggtctgtagttagaactattttaaaagaaaacataataatagca |
19972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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