View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_53 (Length: 288)
Name: NF1202_low_53
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 3708744 - 3708609
Alignment:
| Q |
87 |
ataacttaagacaaaacctttactatactagaaatagcaagattcccctttgaatcatgttaatattaaaggccatctactttcatttaaaattgagatt |
186 |
Q |
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| T |
3708744 |
ataacttaagacaaaacctttactatactagaaatagtaagattcccctttgaatcatgttaatattaaaggccatctgctttcatttaaaattgagatt |
3708645 |
T |
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| Q |
187 |
gcatatgccaattgtaaaccaagactagagccactt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3708644 |
gcatatgccaattgtaaaccaagactagagccactt |
3708609 |
T |
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