View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_6 (Length: 808)
Name: NF1202_low_6
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 512 - 742
Target Start/End: Complemental strand, 43906653 - 43906423
Alignment:
| Q |
512 |
atggttttataatgaggaatgagaaaacttagagaggaagattaggatatgatatgacagaaaatgaggtgtaaaagagagaatattacaagaattaaag |
611 |
Q |
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| T |
43906653 |
atggttttataatgaggaatgagaaaacttagagaggaagattaggatatgatatgacagaaaatgaggtgtaaaagagagaatattacaagaattaaag |
43906554 |
T |
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| Q |
612 |
ggtgttgtctctctggagttggtaaccattaagaatcataggtgattcatgtgacattttggaacaaaagaaaaagaggaatggtcatgaaatttgtcag |
711 |
Q |
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| T |
43906553 |
ggtgttgtctctctggagttggtaaccattaagaatcataggtgattcatgtgacattttggaacaaaagaaaaagaggaatggtcatgaaatttgtcag |
43906454 |
T |
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| Q |
712 |
tgccagaatctataaattgaaagacgtaaag |
742 |
Q |
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| T |
43906453 |
tgccagaatctataaattgaaagacgtaaag |
43906423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 277 - 466
Target Start/End: Complemental strand, 43906902 - 43906713
Alignment:
| Q |
277 |
cattggctgtgtttagtgtttaccattttgtataactttttggtttcaacaatccttgaaacattttcactctgagaaagaattgtattgaaacaggatc |
376 |
Q |
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| T |
43906902 |
cattggctgtgtttagtgtttaccattttgtataactttttggtttcaacaatccttgaaacattttcactctgagaaagaattgtattgaaacaggatc |
43906803 |
T |
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| Q |
377 |
caaattaatgaggatgttaattgctatgttgaggtgaaaatgaaaaataggctgaaaataagaatgaacgttaaccttatataatatgtg |
466 |
Q |
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| T |
43906802 |
caaattaatgaggatgttaattgctatgtaaaggtgaaaatgaaaaataggctgaaaataagaatgaacgttaaccttatataatatgtg |
43906713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 43907162 - 43906972
Alignment:
| Q |
16 |
attaattaagaatgaatcaaaatttacaagaaagttaaagattacccttccatatgcgttgtattcaagagaattcttgagaagatcaacaagatctttc |
115 |
Q |
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| T |
43907162 |
attaattaagaatgaatcaaaatttacaagaaagttaaagattacccttccatatgcattgtattcaagagaattcttgagaagatcaacaagatctttc |
43907063 |
T |
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| Q |
116 |
gtaagaaatttttgcactgcgtttcgcttcttccttattgtttctaatcttgtcttaatcaacttcaagcaatttttgctgttaattttcc |
206 |
Q |
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| T |
43907062 |
ttaagaaatttttgcactgcgtttcgcttcttccttattgtttctaatcttgtctttatcaacttcaagcaatttttgctgttaattttcc |
43906972 |
T |
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