View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_60 (Length: 278)
Name: NF1202_low_60
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 32 - 264
Target Start/End: Complemental strand, 1103592 - 1103360
Alignment:
| Q |
32 |
tacctggtgtgaaaaagcctaactcaaaggttccatcattagaaaccaaagtgttaccatcatcaagagattggaattgggttattgtatcaattgcggt |
131 |
Q |
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| T |
1103592 |
tacctggtgtgaaaaagcctaactcaaaggttccatcattagaaaccaaagtgttaccatcatcaagagattggaattgggttattgtatcaattgcggt |
1103493 |
T |
|
| Q |
132 |
tgataattgagagataaagaacaataaattggaaataattaaaagcattatgataggaagggtattggtcattttggaatgattgaatttgatgcaaata |
231 |
Q |
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| T |
1103492 |
tgataattgagagaagaagaacaataaattggaaataattaaaagcattatgataggaagggtattggtcattttggaatgattgaatttgatgcaaata |
1103393 |
T |
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| Q |
232 |
taagttatattggtatttttctcgtctctagtc |
264 |
Q |
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|||||||||| ||||||||||||||||||||| |
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| T |
1103392 |
caagttatatttgtatttttctcgtctctagtc |
1103360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 1046562 - 1046455
Alignment:
| Q |
32 |
tacctggtgtgaaaaagcctaactcaaaggttccatcattagaaaccaaagtgttaccatcatcaagagattggaattgggttattgtatcaattgcggt |
131 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
1046562 |
tacctggtgtgaaaaagcctaactcaaaggttccgtcattagaaaccaaggtgttgccatcatcaagagattgaaattgggtgattgtatcaattgcggt |
1046463 |
T |
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| Q |
132 |
tgataatt |
139 |
Q |
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||||||| |
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| T |
1046462 |
agataatt |
1046455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 1071375 - 1071266
Alignment:
| Q |
32 |
tacctggtgtgaaaaagcctaactcaaaggttccatcattagaaaccaaagtgttaccatcatcaagagattggaattgggttattgtatcaattgcggt |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| || |||||||||| ||| |
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| T |
1071375 |
tacctggtgtgaaaaagcctaactcaaaggttccatcattagaaaccaaagtgttgccatcattaagagattgaaattgggtgatggtatcaattgaggt |
1071276 |
T |
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| Q |
132 |
tgataattga |
141 |
Q |
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||||||||| |
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| T |
1071275 |
agataattga |
1071266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 1087039 - 1086930
Alignment:
| Q |
32 |
tacctggtgtgaaaaagcctaactcaaaggttccatcattagaaaccaaagtgttaccatcatcaagagattggaattgggttattgtatcaattgcggt |
131 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| || |||||||||| || |
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| T |
1087039 |
tacctggtgtgaaaaatcctaactcaaaggttccatcattagaaaccaaagtgttgccatcatgaagagattgaaattgggtgatggtatcaattgaagt |
1086940 |
T |
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| Q |
132 |
tgataattga |
141 |
Q |
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||||||||| |
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| T |
1086939 |
agataattga |
1086930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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