View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1202_low_61 (Length: 277)

Name: NF1202_low_61
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1202_low_61
NF1202_low_61
[»] chr2 (3 HSPs)
chr2 (13-248)||(16334600-16334835)
chr2 (13-248)||(16124816-16125051)
chr2 (13-248)||(16126969-16127204)
[»] chr3 (19 HSPs)
chr3 (13-248)||(36017302-36017537)
chr3 (13-241)||(36034215-36034447)
chr3 (13-244)||(36025404-36025632)
chr3 (13-236)||(36004651-36004871)
chr3 (75-230)||(23435419-23435574)
chr3 (97-236)||(36009699-36009838)
chr3 (75-233)||(23353848-23354006)
chr3 (75-233)||(23406697-23406855)
chr3 (75-233)||(23465351-23465509)
chr3 (72-233)||(23449218-23449379)
chr3 (91-238)||(23480703-23480850)
chr3 (75-233)||(23500981-23501139)
chr3 (91-248)||(21087320-21087477)
chr3 (86-233)||(21088523-21088670)
chr3 (97-230)||(23455985-23456118)
chr3 (75-233)||(23441828-23441986)
chr3 (75-233)||(23474360-23474518)
chr3 (75-233)||(23388337-23388495)
chr3 (121-236)||(35766233-35766348)
[»] chr4 (1 HSPs)
chr4 (75-248)||(12894620-12894793)
[»] scaffold0201 (1 HSPs)
scaffold0201 (85-233)||(13525-13673)
[»] scaffold0570 (1 HSPs)
scaffold0570 (85-230)||(9667-9812)
[»] scaffold0022 (1 HSPs)
scaffold0022 (90-205)||(167562-167677)
[»] chr8 (7 HSPs)
chr8 (168-211)||(12178788-12178831)
chr8 (168-211)||(12190483-12190526)
chr8 (168-211)||(12423216-12423259)
chr8 (168-211)||(12434911-12434954)
chr8 (168-214)||(6097884-6097930)
chr8 (168-208)||(5568723-5568763)
chr8 (172-214)||(7086996-7087038)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 16334600 - 16334835
Alignment:
Q  13 atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16334600 atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat 16334699  T
Q  113 ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16334700 ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtc 16334799  T
Q  213 aagattctagaatgcaagaaagataatggacaaatt 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  16334800 aagattctagaatgcaagaaagataatggacaaatt 16334835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 16125051 - 16124816
Alignment:
Q  13 atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||||||||||||||||    
T  16125051 atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat 16124952  T
Q  113 ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  16124951 ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc 16124852  T
Q  213 aagattctagaatgcaagaaagataatggacaaatt 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  16124851 aagattctagaatgcaagaaagataatggacaaatt 16124816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 16127204 - 16126969
Alignment:
Q  13 atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||||||||||||||||    
T  16127204 atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat 16127105  T
Q  113 ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  16127104 ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc 16127005  T
Q  213 aagattctagaatgcaagaaagataatggacaaatt 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  16127004 aagattctagaatgcaagaaagataatggacaaatt 16126969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 9e-76; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 36017537 - 36017302
Alignment:
Q  13 atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat 112  Q
    |||||||||| ||||||||||||||||||||||||||| |||||| ||| ||| ||| ||||||| ||||||||| ||||||| |||||||||| |||||    
T  36017537 atactcgtagcaaattcacaagccatcttaatgaagctctgaaaaggagtggcgttaggacatttgtagatgacagcgagcttgaaaaaggagacgagat 36017438  T
Q  113 ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtc 212  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||||| || ||  || ||||||||||||| ||||| || |||||||||||||||    
T  36017437 ctcatcagcactgatcaaagccattgaggagtcagatgcatctatagtcatattctcgaaagactatgcttcttctaaatgatgcttgaatgaactcgtc 36017338  T
Q  213 aagattctagaatgcaagaaagataatggacaaatt 248  Q
    |||||||||||||||||||||||| | |||||||||    
T  36017337 aagattctagaatgcaagaaagatcagggacaaatt 36017302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 36034447 - 36034215
Alignment:
Q  13 atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat 112  Q
    |||||||||| ||||||||||||||||||||| ||||| || ||||||||||||||  |||||||||||| |||| ||||||| |||||||||| |||||    
T  36034447 atactcgtagcaaattcacaagccatcttaataaagctctgcaaaagagcggcctttggacatttatagacgacagcgagcttgaaaaaggagacgagat 36034348  T
Q  113 ctcatcagcactgatcaaagccattgaagagtcatgtgcatc----tatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaact 208  Q
    ||||||||||||||||||||||||||| ||||||  ||||||    |||| |||| || ||| || ||||||||||||||||||||| ||||||||||||    
T  36034347 ctcatcagcactgatcaaagccattgaggagtcagatgcatctctatatattcatattctcaaaagactatgcttcttcaaaatggtatttgaatgaact 36034248  T
Q  209 cgtcaagattctagaatgcaagaaagataatgg 241  Q
    |||||||||||||||||||||||||||| ||||    
T  36034247 cgtcaagattctagaatgcaagaaagatcatgg 36034215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 36025632 - 36025404
Alignment:
Q  13 atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat 112  Q
    ||||||||||||| ||||||||||||||| |||||||| |||  ||||  |   |||  ||||||||||||||||| |||||| |||||||||| |||||    
T  36025632 atactcgtagaaacttcacaagccatctttatgaagctctgagcaagaaag---ttataacatttatagatgacaatgagcttgaaaaaggagacgagat 36025536  T
Q  113 ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtc 212  Q
    ||| ||||||||||||||||| |||||  |||| | ||||||||| |||||||| ||| || |||||||||| ||||||||||| |||||||||||||||    
T  36025535 ctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtc 36025436  T
Q  213 aagattctagaatgcaagaaagataatggaca 244  Q
    ||||||||||||||||||||||||||||||||    
T  36025435 aagattctagaatgcaagaaagataatggaca 36025404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 36004871 - 36004651
Alignment:
Q  13 atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat 112  Q
    ||||| ||||||| ||||||||||||||| |||||||| |||  ||||      |||  ||||||||||||||||| |||||| |||||||||| |||||    
T  36004871 atactggtagaaagttcacaagccatctttatgaagctctgagcaagaaaa---ttataacatttatagatgacaatgagcttgaaaaaggagacgagat 36004775  T
Q  113 ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtc 212  Q
    ||| ||||||||||||||||| |||||||| || | ||||||||| |||||||| ||| || |||| ||||| ||||||||||| |||||||||||||||    
T  36004774 ctcgtcagcactgatcaaagctattgaagattcgtctgcatctatcgtcatcttctcaaaagactacgcttcctcaaaatggtgcttgaatgaactcgtc 36004675  T
Q  213 aagattctagaatgcaagaaagat 236  Q
    |||||||||||||| |||||||||    
T  36004674 aagattctagaatgtaagaaagat 36004651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 23435574 - 23435419
Alignment:
Q  75 tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa 174  Q
    ||||||||  |||| |||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||  ||||||||| |||||||| |||||||    
T  23435574 tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa 23435475  T
Q  175 actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaag 230  Q
    |||||||||||||||||||||| || ||||| |||   ||||||||||||||||||    
T  23435474 actatgcttcttcaaaatggtgcttaaatgagctcaaaaagattctagaatgcaag 23435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 36009838 - 36009699
Alignment:
Q  97 aaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtg 196  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||   |||||||||||||||| ||| || | ||||||||||||||||||||    
T  36009838 aaaaaggagatgagatatcatcatcactaatcaaagccattgaggagtcatacacatctatagtcatcttttcaaaagattatgcttcttcaaaatggtg 36009739  T
Q  197 tttgaatgaactcgtcaagattctagaatgcaagaaagat 236  Q
     ||||||||||||||||| |||||||||||||| ||||||    
T  36009738 cttgaatgaactcgtcaaaattctagaatgcaaaaaagat 36009699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 23354006 - 23353848
Alignment:
Q  75 tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa 174  Q
    ||||||||  |||| |||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||  ||||||||| |||||||| |||||||    
T  23354006 tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa 23353907  T
Q  175 actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa 233  Q
    |||||||||| ||||||||||| |||||||| |||   |||||||| ||||||||||||    
T  23353906 actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaa 23353848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 23406855 - 23406697
Alignment:
Q  75 tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa 174  Q
    ||||||||  |||| |||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||  ||||||||| |||||||| |||||||    
T  23406855 tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa 23406756  T
Q  175 actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa 233  Q
    |||||||||| ||||||||||| |||||||| |||   |||||||| ||||||||||||    
T  23406755 actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaa 23406697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 23465509 - 23465351
Alignment:
Q  75 tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa 174  Q
    ||||||||  |||| |||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||  ||||||||| |||||||| |||||||    
T  23465509 tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa 23465410  T
Q  175 actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa 233  Q
    |||||||||| ||||||||||| |||||||| |||   |||||||| ||||||||||||    
T  23465409 actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaa 23465351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 23449379 - 23449218
Alignment:
Q  72 acatttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcag 171  Q
    |||||||||||  |||| ||||||  ||||||||||||||||||  ||||||| |||||||||||||| ||||||  ||||||||| |||||||| ||||    
T  23449379 acatttatagacaacaatgagcttcgaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcag 23449280  T
Q  172 aaaactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa 233  Q
    ||||||||||||| ||||||||||| |||||||| |||   |||||||| ||||||||||||    
T  23449279 aaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaa 23449218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 23480850 - 23480703
Alignment:
Q  91 agcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaa 190  Q
    ||||| |||||||||||||||||||  ||||||| ||||||||||||||  |||||  ||||||||| |||||||| |||||||||||||||||||||||    
T  23480850 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgagaagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaa 23480751  T
Q  191 atggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataa 238  Q
    |||||| |||||||| |||   |||||||| |||||||||||| ||||    
T  23480750 atggtgcttgaatgagctcaagaagattcttgaatgcaagaaatataa 23480703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 23501139 - 23500981
Alignment:
Q  75 tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa 174  Q
    ||||||||  |||| |||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||  ||||||||| |||||||| |||||||    
T  23501139 tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa 23501040  T
Q  175 actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa 233  Q
    |||||||||| ||||||||||| |||||||| |||   |||||||| ||||| ||||||    
T  23501039 actatgcttcgtcaaaatggtgcttgaatgagctcaaaaagattcttgaatgtaagaaa 23500981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 91 - 248
Target Start/End: Complemental strand, 21087477 - 21087320
Alignment:
Q  91 agcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaa 190  Q
    ||||||||||||||||| ||||| || ||| ||| |||||||||||||||||||||  |||||| || | |||||| ||||||||||| ||||| |||||    
T  21087477 agcttaaaaaaggagataagatcacaccagaactcatcaaagccattgaagagtcacatgcatcgattgacatcttctcagaaaactacgcttcctcaaa 21087378  T
Q  191 atggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaatt 248  Q
    |||||| |||||||| |||   ||||||||||||||||||||| |||| | |||||||    
T  21087377 atggtgcttgaatgagctcaaaaagattctagaatgcaagaaatataaggaacaaatt 21087320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 21088670 - 21088523
Alignment:
Q  86 caacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttct 185  Q
    ||||||||||||||||||||| ||||||||  ||||| | ||| |||| ||||| |||||| ||| |||||| || ||||| |||||||||||||||||     
T  21088670 caacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcacgtgtatctattgttatcttttcagaaaactatgcttcc 21088571  T
Q  186 tcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa 233  Q
    ||||||||||| |||||||| |||   ||||||| |||||||||||||    
T  21088570 tcaaaatggtgcttgaatgagctcaaaaagattcaagaatgcaagaaa 21088523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 23456118 - 23455985
Alignment:
Q  97 aaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtg 196  Q
    |||||||||||||||||||| || |||| |||||| ||||||| ||||||  ||  ||||| |||||||| ||||||||||| ||||| |||||||||||    
T  23456118 aaaaaggagatgagatctcaccaacactcatcaaaaccattgaggagtcacatgtgtctattgtcatcttctcagaaaactacgcttcctcaaaatggtg 23456019  T
Q  197 tttgaatgaactcgtcaagattctagaatgcaag 230  Q
    ||||||||| |||   ||||||||||||||||||    
T  23456018 tttgaatgatctcaaaaagattctagaatgcaag 23455985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 23441986 - 23441828
Alignment:
Q  75 tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa 174  Q
    ||||||||  |||| |||||| ||||||||||| |||| ||  ||||||| |||| ||||||||| ||||||  ||  ||||| |||||||| |||||||    
T  23441986 tttatagacaacaatgagcttcaaaaaggagataagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaa 23441887  T
Q  175 actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa 233  Q
    |||||||||| ||||||||||| |||||||| |||   |||||||| ||||||||||||    
T  23441886 actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaa 23441828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 23474518 - 23474360
Alignment:
Q  75 tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa 174  Q
    ||||||||  |||| |||||| ||||||||||| |||| ||  ||||||| |||| ||||||||| ||||||  ||  ||||| |||||||| |||||||    
T  23474518 tttatagacaacaatgagcttcaaaaaggagataagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaa 23474419  T
Q  175 actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa 233  Q
    |||||||||| ||||||||||| |||||||| |||   |||||||| ||||||||||||    
T  23474418 actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaa 23474360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 23388495 - 23388337
Alignment:
Q  75 tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa 174  Q
    ||||||||  |||| |||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||   |  || ||  ||||||| |||||||    
T  23388495 tttatagacaacaatgagcttgaaaaaggagatgagatctcaccagcactcatcaaagccattgaggagtcacacgtgtcaattatcatcttctcagaaa 23388396  T
Q  175 actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa 233  Q
    | |||||||| ||||||||||| |||||||| |||   ||||||||  |||||||||||    
T  23388395 attatgcttcctcaaaatggtgcttgaatgagctcaagaagattcttcaatgcaagaaa 23388337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 35766233 - 35766348
Alignment:
Q  121 cactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattct 220  Q
    |||| |||| ||||||||||||||||  ||  ||| | ||||| || ||||||||||||||||| || || ||||||||| ||||| | || |||||  |    
T  35766233 cactcatcacagccattgaagagtcacatgtttctgttgtcatattttcagaaaactatgcttcatccaagtggtgtttggatgaaattgtgaagatcat 35766332  T
Q  221 agaatgcaagaaagat 236  Q
     ||||| |||||||||    
T  35766333 ggaatgtaagaaagat 35766348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 248
Target Start/End: Original strand, 12894620 - 12894793
Alignment:
Q  75 tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa 174  Q
    |||||||||||||| |||||| |||||||||||||||| || |||||| |||||||||||||||| ||||||| ||||||||| |||||||| |||  |     
T  12894620 tttatagatgacaatgagcttcaaaaaggagatgagatatcctcagcattgatcaaagccattgaggagtcatatgcatctattgtcatcttctcaatag 12894719  T
Q  175 actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaatt 248  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12894720 actatgcttcctcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagatcatggacaaatt 12894793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 13673 - 13525
Alignment:
Q  85 acaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttc 184  Q
    |||| |||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||  ||||||||| |||||||| |||||||||||||||||    
T  13673 acaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttc 13574  T
Q  185 ttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa 233  Q
     ||||||||||| || ||||| |||   |||||||| ||||||||||||    
T  13573 ctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagaaa 13525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 230
Target Start/End: Original strand, 9667 - 9812
Alignment:
Q  85 acaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttc 184  Q
    |||| |||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||  ||||||||| || ||||| |||||||||||||||||    
T  9667 acaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtaatcttctcagaaaactatgcttc 9766  T
Q  185 ttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaag 230  Q
     ||||||||||| || ||||| |||   |||||||| |||||||||    
T  9767 ctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaag 9812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 167562 - 167677
Alignment:
Q  90 gagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaa 189  Q
    |||||| |||||||||||||||||||  || |||| |||||||||||||| |||| |  ||||||||| |||||||| ||||||||||||||||| |||     
T  167562 gagcttcaaaaaggagatgagatctcgccaacactcatcaaagccattgaggagtaacatgcatctattgtcatcttctcagaaaactatgcttcctcat 167661  T
Q  190 aatggtgtttgaatga 205  Q
    ||||||| ||||||||    
T  167662 aatggtgcttgaatga 167677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 12178831 - 12178788
Alignment:
Q  168 tcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgt 211  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  12178831 tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt 12178788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 12190526 - 12190483
Alignment:
Q  168 tcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgt 211  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  12190526 tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt 12190483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 12423259 - 12423216
Alignment:
Q  168 tcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgt 211  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  12423259 tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt 12423216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 12434954 - 12434911
Alignment:
Q  168 tcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgt 211  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  12434954 tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt 12434911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 6097930 - 6097884
Alignment:
Q  168 tcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtcaa 214  Q
    ||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  6097930 tcagaaaactatgcttcctcaaaatggtgtttggatgaactcctcaa 6097884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 5568723 - 5568763
Alignment:
Q  168 tcagaaaactatgcttcttcaaaatggtgtttgaatgaact 208  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  5568723 tcagagaactatgcttcttcaacatggtgtttgaatgaact 5568763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 7087038 - 7086996
Alignment:
Q  172 aaaactatgcttcttcaaaatggtgtttgaatgaactcgtcaa 214  Q
    ||||||||||||||||||||||||||||| |||| || |||||    
T  7087038 aaaactatgcttcttcaaaatggtgtttggatgagcttgtcaa 7086996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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