View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1202_low_65 (Length: 266)

Name: NF1202_low_65
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1202_low_65
NF1202_low_65
[»] chr4 (2 HSPs)
chr4 (60-253)||(55331017-55331210)
chr4 (57-159)||(55336449-55336551)
[»] chr2 (10 HSPs)
chr2 (59-262)||(8395289-8395492)
chr2 (59-262)||(8406080-8406283)
chr2 (59-160)||(8439297-8439398)
chr2 (72-134)||(8368479-8368541)
chr2 (72-134)||(8400869-8400931)
chr2 (111-157)||(8404185-8404231)
chr2 (72-134)||(8422446-8422508)
chr2 (59-160)||(8375705-8375806)
chr2 (59-160)||(8412200-8412301)
chr2 (59-160)||(8434298-8434399)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 60 - 253
Target Start/End: Original strand, 55331017 - 55331210
Alignment:
Q  60 ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331017 ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca 55331116  T
Q  160 tgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttct 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331117 tgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttct 55331210  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 55336449 - 55336551
Alignment:
Q  57 gcaggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttct 156  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||| | ||||| | |||||||||||||||||||||||||||||| |||||||    
T  55336449 gcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttct 55336548  T
Q  157 cca 159  Q
    |||    
T  55336549 cca 55336551  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 262
Target Start/End: Complemental strand, 8395492 - 8395289
Alignment:
Q  59 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 158  Q
    ||||||||||  |||||| | | ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||||||||| |||    
T  8395492 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc 8395393  T
Q  159 atgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttctctgct 258  Q
    ||   || ||| |||||||  ||  |  ||||||||||||| | |||  |||  || | |||| |||| |||||||| ||||||||||| ||||| || |    
T  8395392 attgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttgtt 8395293  T
Q  259 cctc 262  Q
    ||||    
T  8395292 cctc 8395289  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 262
Target Start/End: Original strand, 8406080 - 8406283
Alignment:
Q  59 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 158  Q
    ||||||||||  |||||| | | ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||||||||| |||    
T  8406080 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc 8406179  T
Q  159 atgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttctctgct 258  Q
    ||   || ||| |||||||  ||  |  ||||||||||||| | |||  |||  || | |||| |||| |||||||| ||||||||||| ||||| || |    
T  8406180 attgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttgtt 8406279  T
Q  259 cctc 262  Q
    ||||    
T  8406280 cctc 8406283  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 8439297 - 8439398
Alignment:
Q  59 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 158  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||||||||||||| || |||    
T  8439297 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttcc 8439396  T
Q  159 at 160  Q
    ||    
T  8439397 at 8439398  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 8368479 - 8368541
Alignment:
Q  72 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 134  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8368479 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8368541  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 8400931 - 8400869
Alignment:
Q  72 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 134  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8400931 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8400869  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 8404185 - 8404231
Alignment:
Q  111 cctaataaaggaagtggataagctttgtcaagtgccaaaactttctc 157  Q
    |||||||||||||||||||| ||||| ||||| |||||||| |||||    
T  8404185 cctaataaaggaagtggataggctttatcaagagccaaaaccttctc 8404231  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 8422508 - 8422446
Alignment:
Q  72 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 134  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8422508 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8422446  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 8375806 - 8375705
Alignment:
Q  59 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 158  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8375806 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8375707  T
Q  159 at 160  Q
    ||    
T  8375706 at 8375705  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 8412200 - 8412301
Alignment:
Q  59 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 158  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8412200 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8412299  T
Q  159 at 160  Q
    ||    
T  8412300 at 8412301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 8434298 - 8434399
Alignment:
Q  59 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 158  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8434298 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8434397  T
Q  159 at 160  Q
    ||    
T  8434398 at 8434399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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