View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_67 (Length: 262)
Name: NF1202_low_67
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 40458220 - 40458022
Alignment:
| Q |
51 |
tatgttaaaataagtcaactgttgttattctaggaagagatatttttggtatcaattgatttgtatagctgtgatttaatttttagttttaaagcctcct |
150 |
Q |
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| T |
40458220 |
tatgttaaaataagtcaactgttgttattctaggaagagatatttttggtatcaattgatttgtatagctgtgatttaatttttagttttaaagcctcct |
40458121 |
T |
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| Q |
151 |
gttattaaggagagacatcaggaacagaagttgtatatatgtttatggcctctgtgaataataatatatcagaattttctctttgaaactattctatat |
249 |
Q |
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| T |
40458120 |
gttattaaggagagacattaggaacagaagctgtatatatgtttatgccctctgtgaataataatatatcagaattttctctttgaaactattctatat |
40458022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 53 - 248
Target Start/End: Complemental strand, 40453663 - 40453468
Alignment:
| Q |
53 |
tgttaaaataagtcaactgttgttattctaggaagagatatttttggtatcaattgatttgtatagctgtgatttaatttttagttttaaagcctcctgt |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40453663 |
tgttaaaataagtcaactgttgttattctaggaagagatatttttggtatcaattgatttgtatagctgtgatttaatttttagttttaaagcctcatgt |
40453564 |
T |
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| Q |
153 |
tattaaggagagacatcaggaacagaagttgtatatatgtttatggcctctgtgaataataatatatcagaattttctctttgaaactattctata |
248 |
Q |
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| T |
40453563 |
tattaaggagagacattaggaacagaagctgtatatatgtttatgccctctgtgaataataatatatcagaattttctctttgaaactattctata |
40453468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 53 - 248
Target Start/End: Original strand, 32203984 - 32204179
Alignment:
| Q |
53 |
tgttaaaataagtcaactgttgttattctaggaagagatatttttggtatcaattgatttgtatagctgtgatttaatttttagttttaaagcctcctgt |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32203984 |
tgttaaaataagtcaactgttgttattctaggaagagatatttttggtatcaattgatttgtatagctgtgatttaatttttagttttaaagccttctgt |
32204083 |
T |
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| Q |
153 |
tattaaggagagacatcaggaacagaagttgtatatatgtttatggcctctgtgaataataatatatcagaattttctctttgaaactattctata |
248 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32204084 |
tattaaggagagacattaggaacagaagctgtatatatgtttatgccctctgtgaataataatatatcagaattttctctttgaaactattctata |
32204179 |
T |
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