View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_69 (Length: 252)
Name: NF1202_low_69
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 23733220 - 23732979
Alignment:
| Q |
1 |
aaaaggcaccataacatagaagaagtaaaacaatactcaacaattaaaagaaacagatgcatcgtatatttgaggcaccatttgatcaccacagaaggca |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||| |
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| T |
23733220 |
aaaaggcaccataacatagacgaagtaaaacaatactcaacaattaaaagaaacagatgcatggtatatttcaagcaccattcgatcaccacagaaggca |
23733121 |
T |
|
| Q |
101 |
ccattccacaaatgcagtcacgtaataaattatatttttaagttctaacaagttaaaataccacaacgaattcttagttatcacagaaacnnnnnnncca |
200 |
Q |
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||||||| ||||| || || | |||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||| ||||||| | | |
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| T |
23733120 |
ccattccccaaattcattcgctcaataaattatatttctaagttataacaagttgaaataccacaacgaagtcttagttatcccagaaacgaaaaaacaa |
23733021 |
T |
|
| Q |
201 |
gaaacaaaacaatgaagaacatatcacagaaacgcagaataa |
242 |
Q |
| |
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|||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
23733020 |
gaaacaaaacgatgaagaaaatatcgcagaaacgcagaataa |
23732979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 23730337 - 23730107
Alignment:
| Q |
11 |
ataacatagaagaagtaaaacaatactcaacaattaaaagaaacagatgcatcgtatatttgaggcaccatttgatcaccacagaaggcaccattccaca |
110 |
Q |
| |
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|||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||||||| |
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| T |
23730337 |
ataaaatagaagaagtaaaataatactcagcaattaaaagaaacagatgcat-gtatatttcaagcaccattcgatcaccacagaaggcaccattccaca |
23730239 |
T |
|
| Q |
111 |
aatgcagtcacgtaataaattatatttttaagttctaacaagttaaaataccacaacgaattcttagttatcacagaaacnnnnnnnccagaaacaaaac |
210 |
Q |
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||| || | |||||||||||||| |||||| ||| ||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||| |
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| T |
23730238 |
aattcatacggtcaataaattatatttctaagttataaaaagttgaaataccacaacgaagtcttagttatcgcagaaacgaaaaaaccagaaacaaaac |
23730139 |
T |
|
| Q |
211 |
aatgaagaacatatcacagaaacgcagaataa |
242 |
Q |
| |
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|||||||| |||| |||||||||||||||| |
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| T |
23730138 |
gatgaagaaaatatggcagaaacgcagaataa |
23730107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 23779813 - 23780045
Alignment:
| Q |
1 |
aaaaggcaccataacatagaagaagtaaaacaatactcaacaattaaaagaaacag---atgcatcgtatatttgaggcaccatttgatcaccacagaag |
97 |
Q |
| |
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||||| |||||||||||||||| ||| | ||||||||||||||||||||| ||| ||| ||| ||||||| | |||||||| |||||||| |||| |
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| T |
23779813 |
aaaagacaccataacatagaag---taagataatactcaacaattaaaagaa-caggacatggatcttatatttcaagcaccattccatcaccacggaag |
23779908 |
T |
|
| Q |
98 |
gcaccattccacaaatgcagtcacgtaataaattatatttttaagttctaacaagttaaaataccacaacgaattcttagttatcacagaaacnnnnnnn |
197 |
Q |
| |
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|| ||||||||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| || || |||| |
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| T |
23779909 |
acatcattccacaaatgcattcatgtaataaattatatttctaagttctaacaagttgaaataccacaacgtattcttagttctcgcaaaaacgaaaata |
23780008 |
T |
|
| Q |
198 |
ccagaaacaaaacaatgaagaacatatcacagaaacg |
234 |
Q |
| |
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||||||||| ||| |||||||| ||||| |||||||| |
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| T |
23780009 |
ccagaaacagaacgatgaagaaaatatcgcagaaacg |
23780045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 23866766 - 23866998
Alignment:
| Q |
1 |
aaaaggcaccataacatagaagaagtaaaacaatactcaacaattaaaagaaacag---atgcatcgtatatttgaggcaccatttgatcaccacagaag |
97 |
Q |
| |
|
||||| |||||||||||||||| ||| | ||||||||||||||||||||| ||| ||| ||| ||||||| | |||||||| |||||||| |||| |
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| T |
23866766 |
aaaagacaccataacatagaag---taagataatactcaacaattaaaagaa-caggacatggatcttatatttcaagcaccattccatcaccacggaag |
23866861 |
T |
|
| Q |
98 |
gcaccattccacaaatgcagtcacgtaataaattatatttttaagttctaacaagttaaaataccacaacgaattcttagttatcacagaaacnnnnnnn |
197 |
Q |
| |
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|| ||||||||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| || || |||| |
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| T |
23866862 |
acatcattccacaaatgcattcatgtaataaattatatttctaagttctaacaagttgaaataccacaacgtattcttagttctcgcaaaaacgaaaata |
23866961 |
T |
|
| Q |
198 |
ccagaaacaaaacaatgaagaacatatcacagaaacg |
234 |
Q |
| |
|
||||||||| ||| |||||||| ||||| |||||||| |
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| T |
23866962 |
ccagaaacagaacgatgaagaaaatatcgcagaaacg |
23866998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 23645765 - 23645574
Alignment:
| Q |
1 |
aaaaggcaccataacatagaagaagtaaaacaatactcaacaattaaaagaaacag---atgcatcgtatatttgaggcaccatttgatcaccacagaag |
97 |
Q |
| |
|
||||| || ||||||| |||||||| |||| |||||||| |||||||||||||||| ||||||| ||||||| | ||||||| ||||||| |||| |
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| T |
23645765 |
aaaagacagcataacaaagaagaaggaaaataatactcagcaattaaaagaaacaggacatgcatcttatatttcaagcaccataccatcaccatggaag |
23645666 |
T |
|
| Q |
98 |
gcaccattccacaaat---------gcagtcacgtaataaattatatttttaagttctaacaagttaaaataccacaacgaattcttagtta |
180 |
Q |
| |
|
|||| |||| ||| || ||| |||||||||||| ||||||| |||||||||||||| | ||||||||||||| ||||||||||| |
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|
| T |
23645665 |
gcactattcgacatattcgacatatgcattcacgtaataaactatatttctaagttctaacaagctgaaataccacaacgtattcttagtta |
23645574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 23812809 - 23813000
Alignment:
| Q |
1 |
aaaaggcaccataacatagaagaagtaaaacaatactcaacaattaaaagaaacag---atgcatcgtatatttgaggcaccatttgatcaccacagaag |
97 |
Q |
| |
|
||||| || ||||||| |||||||| |||| |||||||| |||||||||||||||| ||||||| ||||||| | ||||||| ||||||| |||| |
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|
| T |
23812809 |
aaaagacagcataacaaagaagaaggaaaataatactcagcaattaaaagaaacaggacatgcatcttatatttcaagcaccataccatcaccatggaag |
23812908 |
T |
|
| Q |
98 |
gcaccattccacaaat---------gcagtcacgtaataaattatatttttaagttctaacaagttaaaataccacaacgaattcttagtta |
180 |
Q |
| |
|
|||| |||| ||| || ||| |||||||||||| ||||||| |||||||||||||| | ||||||||||||| ||||||||||| |
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|
| T |
23812909 |
gcactattcgacatattcgacatatgcattcacgtaataaactatatttctaagttctaacaagctgaaataccacaacgtattcttagtta |
23813000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 23768236 - 23768299
Alignment:
| Q |
118 |
tcacgtaataaattatatttttaagttctaacaagttaaaataccacaacgaattcttagttat |
181 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| ||||||| ||| | |||||||||||| |
|
|
| T |
23768236 |
tcacgtaataaatcatatttctaagttctaacaagttgaaataccgcaatgtattcttagttat |
23768299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 23818084 - 23818147
Alignment:
| Q |
118 |
tcacgtaataaattatatttttaagttctaacaagttaaaataccacaacgaattcttagttat |
181 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| ||||||| ||| | |||||||||||| |
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|
| T |
23818084 |
tcacgtaataaatcatatttctaagttctaacaagttgaaataccgcaatgtattcttagttat |
23818147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 23780052 - 23780096
Alignment:
| Q |
198 |
ccagaaacaaaacaatgaagaacatatcacagaaacgcagaataa |
242 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
23780052 |
ccagaaacaaaacgatgaagaaaatatcgcagaaacgcagaataa |
23780096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 23867005 - 23867049
Alignment:
| Q |
198 |
ccagaaacaaaacaatgaagaacatatcacagaaacgcagaataa |
242 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
23867005 |
ccagaaacaaaacgatgaagaaaatatcgcagaaacgcagaataa |
23867049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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